STRINGSTRING
RPL27A RPL27A RPL37A RPL37A RPS19 RPS19 HBS1L HBS1L RPS3 RPS3 AKNAD1-1 AKNAD1-1 BTF3L4 BTF3L4 RPL5 RPL5 RPL26L1 RPL26L1 CD74 CD74 HABP4 HABP4 RPL4 RPL4 EFTUD1 EFTUD1 RPS27L RPS27L KCNA4 KCNA4 Y1Q_0000714 Y1Q_0000714 Y1Q_0000679 Y1Q_0000679 RPL24 RPL24 WDR31 WDR31 RPL12 RPL12 EDF1 EDF1 RPL7A RPL7A RPL18 RPL18 RPL28 RPL28 EIF5A2 EIF5A2 RPS27A RPS27A RPL22L1 RPL22L1 TPT1 TPT1 EEF1B2 EEF1B2 Y1Q_0004251 Y1Q_0004251 RPL34 RPL34 RPS17 RPS17 RPS5 RPS5 Y1Q_0023603 Y1Q_0023603 RPL7 RPL7 RPS20 RPS20 SRP72 SRP72 RPL15 RPL15 RPL14 RPL14 RPL21 RPL21 RPS24-1 RPS24-1 FAU FAU RPL23A RPL23A GNB2L1 GNB2L1 SRP14 SRP14 RPS25 RPS25 Y1Q_0009722 Y1Q_0009722 RPL17 RPL17 RPL37 RPL37 PELO PELO KCNV1 KCNV1 RPL30 RPL30 KCNS2 KCNS2 ABCE1 ABCE1 RPL35 RPL35 Y1Q_0008192 Y1Q_0008192 RPL3 RPL3 RPS2 RPS2 RSAD1 RSAD1 SRP68 SRP68 Y1Q_0009070 Y1Q_0009070 RPL22 RPL22 RPLP0 RPLP0 SBDS SBDS RPS18 RPS18 KCNC4 KCNC4 KCNA10 KCNA10 RPS7 RPS7 Y1Q_0014921 Y1Q_0014921 KCNC1 KCNC1 RSRC1 RSRC1 KCNA7 KCNA7 Y1Q_0011941 Y1Q_0011941 RPL36 RPL36 RPL10L RPL10L KCNG2-2 KCNG2-2 SRPR SRPR RPL29 RPL29 SRPRB SRPRB METAP2 METAP2 RPL3-2 RPL3-2 VEZT VEZT SERBP1-1 SERBP1-1 RPL13A RPL13A SRP54 SRP54 HMGN2 HMGN2 METAP1 METAP1 RPL36A RPL36A Y1Q_0015599 Y1Q_0015599 RPL8 RPL8 ETF1 ETF1 RPS26 RPS26 RPL6 RPL6 KXD1 KXD1 Y1Q_0019889 Y1Q_0019889 RPL38 RPL38 EFTUD2 EFTUD2 RPL31 RPL31 Y1Q_0006266 Y1Q_0006266 RPLP2 RPLP2 RPL10A RPL10A RPS10 RPS10 RPS21 RPS21 Y1Q_0017512 Y1Q_0017512 Y1Q_0017513 Y1Q_0017513 RPS6 RPS6 RPSA RPSA SRP9 SRP9 CCDC124 CCDC124 NACAD NACAD MED1 MED1 MED1-2 MED1-2 RPL19 RPL19 RPL23 RPL23 RPS9 RPS9 RPS11 RPS11 KCNQ3 KCNQ3 RPS4X RPS4X RPLP1 RPLP1 Y1Q_0014673 Y1Q_0014673 Y1Q_0014735 Y1Q_0014735 RPL9 RPL9 RPS3A RPS3A IFI35 IFI35 RPL27 RPL27 RPS8 RPS8 NACA NACA RPL7L1 RPL7L1 DOCK4 DOCK4 KCNC2 KCNC2 RPL18A RPL18A RPS16 RPS16 RPS15 RPS15 KCNQ2 KCNQ2 BTF3 BTF3 RPS23 RPS23 SRP19 SRP19 RPS27 RPS27
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPL27A60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
RPL37A60S ribosomal protein L37a. (92 aa)
RPS1940S ribosomal protein S19. (515 aa)
HBS1LHBS1-like protein. (688 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (278 aa)
AKNAD1-1Protein AKNAD1 isoform A. (1047 aa)
BTF3L4Transcription factor BTF3; Belongs to the NAC-beta family. (158 aa)
RPL560S ribosomal protein L5. (317 aa)
RPL26L160S ribosomal protein L26-like 1. (116 aa)
CD74HLA class II histocompatibility antigen gamma chain; Belongs to the universal ribosomal protein uS11 family. (513 aa)
HABP4Intracellular hyaluronan-binding protein 4. (379 aa)
RPL460S ribosomal protein L4. (363 aa)
EFTUD1Elongation factor Tu GTP-binding domain-containing protein 1. (1141 aa)
RPS27L40S ribosomal protein S27. (84 aa)
KCNA4BTB domain-containing protein; Belongs to the potassium channel family. (660 aa)
Y1Q_0000714BTB domain-containing protein. (242 aa)
Y1Q_0000679Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (111 aa)
RPL2460S ribosomal protein L24. (157 aa)
WDR31WD repeat-containing protein 31 isoform A. (363 aa)
RPL1260S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (147 aa)
EDF1Endothelial differentiation-related factor 1. (170 aa)
RPL7A60S ribosomal protein L7a. (266 aa)
RPL1860S ribosomal protein L18. (188 aa)
RPL2860S ribosomal protein L28. (153 aa)
EIF5A2Eukaryotic translation initiation factor 5A. (153 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
RPL22L160S ribosomal protein L22-like 1. (121 aa)
TPT1Translationally-controlled tumor protein; Belongs to the TCTP family. (172 aa)
EEF1B2Elongation factor 1-beta. (168 aa)
Y1Q_0004251RL10P_insert domain-containing protein. (178 aa)
RPL3460S ribosomal protein L34. (117 aa)
RPS1740S ribosomal protein S17. (1124 aa)
RPS540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (514 aa)
Y1Q_0023603Tr-type G domain-containing protein. (502 aa)
RPL760S ribosomal protein L7. (223 aa)
RPS2040S ribosomal protein S20. (119 aa)
SRP72Signal recognition particle subunit SRP72. (563 aa)
RPL15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (186 aa)
RPL1460S ribosomal protein L14. (139 aa)
RPL2160S ribosomal protein L21. (147 aa)
RPS24-140S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
FAU40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
RPL23A60S ribosomal protein L23a. (144 aa)
GNB2L1Guanine nucleotide-binding protein subunit beta-2-like 1. (317 aa)
SRP14Signal recognition particle protein. (110 aa)
RPS2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (126 aa)
Y1Q_0009722Tr-type G domain-containing protein. (859 aa)
RPL1760S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (264 aa)
RPL37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
PELOProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
KCNV1Potassium voltage-gated channel subfamily V member 1; Belongs to the potassium channel family. (410 aa)
RPL3060S ribosomal protein L30. (175 aa)
KCNS2Potassium voltage-gated channel subfamily S member 2; Belongs to the potassium channel family. (477 aa)
ABCE1ATP-binding cassette sub-family E member 1. (566 aa)
RPL3560S ribosomal protein L35. (123 aa)
Y1Q_0008192Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (126 aa)
RPL360S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (407 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (221 aa)
RSAD1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (481 aa)
SRP68Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (597 aa)
Y1Q_0009070Olfactory receptor. (317 aa)
RPL2260S ribosomal protein L22. (125 aa)
RPLP060S acidic ribosomal protein P0. (367 aa)
SBDSRibosome maturation protein SBDS. (250 aa)
RPS1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
KCNC4Potassium voltage-gated channel subfamily C member 4; Belongs to the potassium channel family. (595 aa)
KCNA10Potassium voltage-gated channel subfamily A member 10; Belongs to the potassium channel family. (574 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
Y1Q_0014921Patatin-like phospholipase domain-containing protein 1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (391 aa)
KCNC1Potassium voltage-gated channel subfamily C member 1; Belongs to the potassium channel family. (396 aa)
RSRC1Serine/Arginine-related protein 53. (247 aa)
KCNA7BTB domain-containing protein; Belongs to the potassium channel family. (485 aa)
Y1Q_0011941Uncharacterized protein; Belongs to the potassium channel family. (460 aa)
RPL3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (186 aa)
RPL10L60S ribosomal protein L10. (77 aa)
KCNG2-2BTB domain-containing protein; Belongs to the potassium channel family. (517 aa)
SRPRSignal recognition particle receptor subunit alpha. (649 aa)
RPL2960S ribosomal protein L29. (260 aa)
SRPRBSignal recognition particle receptor subunit beta. (251 aa)
METAP2Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Belongs to the peptidase M24A family. Methionine aminopeptidase eukaryotic type 2 subfamily. (446 aa)
RPL3-2Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (403 aa)
VEZTVezatin isoform B. (804 aa)
SERBP1-1Plasminogen activator inhibitor 1 RNA-binding protein isoform B. (426 aa)
RPL13A60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (203 aa)
SRP54Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (548 aa)
HMGN2Non-histone chromosomal protein HMG-17. (72 aa)
METAP1Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (385 aa)
RPL36A60S ribosomal protein L36a isoform B; Belongs to the eukaryotic ribosomal protein eL42 family. (150 aa)
Y1Q_0015599Potassium voltage-gated channel subfamily C member 1-like; Belongs to the potassium channel family. (431 aa)
RPL860S ribosomal protein L8. (267 aa)
ETF1Eukaryotic peptide chain release factor subunit 1. (437 aa)
RPS2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
RPL660S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (257 aa)
KXD1KxDL motif-containing protein 1. (293 aa)
Y1Q_0019889BTB domain-containing protein. (212 aa)
RPL3860S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
EFTUD2U5 small nuclear ribonucleoprotein component. (858 aa)
RPL3160S ribosomal protein L31. (180 aa)
Y1Q_0006266Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (184 aa)
RPLP260S acidic ribosomal protein P2 isoform A; Belongs to the eukaryotic ribosomal protein P1/P2 family. (141 aa)
RPL10ALymphoid-restricted membrane protein-like. (711 aa)
RPS1040S ribosomal protein S10. (195 aa)
RPS2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
Y1Q_0017512Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (345 aa)
Y1Q_0017513Mediator of RNA polymerase II transcription subunit 1-like. (204 aa)
RPS640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
RPSA40S ribosomal protein SA. (149 aa)
SRP9Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
CCDC124Coiled-coil domain-containing protein 124. (220 aa)
NACADNAC-alpha domain-containing protein 1. (2343 aa)
MED1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1104 aa)
MED1-2Uncharacterized protein. (259 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
RPL2360S ribosomal protein L23 isoform A; Belongs to the universal ribosomal protein uL14 family. (140 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
RPS1140S ribosomal protein S11 isoform A; Belongs to the universal ribosomal protein uS17 family. (158 aa)
KCNQ3Potassium voltage-gated channel subfamily KQT member 3 isoform B. (970 aa)
RPS4X40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (280 aa)
RPLP160S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
Y1Q_0014673Uncharacterized protein. (218 aa)
Y1Q_0014735Elongation factor 1-delta; Belongs to the EF-1-beta/EF-1-delta family. (360 aa)
RPL960S ribosomal protein L9. (143 aa)
RPS3A40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (264 aa)
IFI35Interferon-induced protein. (378 aa)
RPL2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (170 aa)
RPS840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
NACANascent polypeptide-associated complex subunit alpha. (249 aa)
RPL7L160S ribosomal protein L7-like 1. (247 aa)
DOCK4Uncharacterized protein; Belongs to the DOCK family. (1959 aa)
KCNC2Ion_trans domain-containing protein; Belongs to the potassium channel family. (497 aa)
RPL18A60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (167 aa)
RPS1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (161 aa)
KCNQ2Potassium voltage-gated channel subfamily KQT member 2 isoform A; Belongs to the potassium channel family. (682 aa)
BTF3Transcription factor BTF3; Belongs to the NAC-beta family. (223 aa)
RPS2340S ribosomal protein S23 isoform A; Belongs to the universal ribosomal protein uS12 family. (143 aa)
SRP19Signal recognition particle protein. (142 aa)
RPS2740S ribosomal protein S27. (84 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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