(12 nodes) Mixed, incl. Endoplasmic reticulum tubular network, and Establishment of protein localization to endoplasmic reticulum membrane network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit. (1012 aa)
	KDM3B	Lysine-specific demethylase 3B isoform A. (1704 aa)
	REEP2	Receptor expression-enhancing protein. (292 aa)
	REEP3	Receptor expression-enhancing protein. (257 aa)
	Y1Q_0000824	GB1/RHD3-type G domain-containing protein. (531 aa)
	RNF112	RING finger protein 112. (640 aa)
	ATL1	GB1/RHD3-type G domain-containing protein. (553 aa)
	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit isoform C. (1382 aa)
	ATL3	Atlastin-3. (677 aa)
	REEP1	Receptor expression-enhancing protein. (198 aa)
	RAB18	Ras-related protein Rab-18. (206 aa)
	TFEC	Transcription factor EC. (265 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATL1	RAB3GAP1	A0A151N3F2	A0A151M0Q3	GB1/RHD3-type G domain-containing protein.	Rab3 GTPase-activating protein catalytic subunit.	0.472
ATL1	RAB3GAP2	A0A151N3F2	A0A151P3D4	GB1/RHD3-type G domain-containing protein.	Rab3 GTPase-activating protein non-catalytic subunit isoform C.	0.459
ATL1	REEP1	A0A151N3F2	A0A151PA28	GB1/RHD3-type G domain-containing protein.	Receptor expression-enhancing protein.	0.681
ATL1	REEP2	A0A151N3F2	A0A151MID4	GB1/RHD3-type G domain-containing protein.	Receptor expression-enhancing protein.	0.548
ATL1	REEP3	A0A151N3F2	A0A151MUF6	GB1/RHD3-type G domain-containing protein.	Receptor expression-enhancing protein.	0.742
ATL3	RAB3GAP1	A0A151P4V4	A0A151M0Q3	Atlastin-3.	Rab3 GTPase-activating protein catalytic subunit.	0.472
ATL3	RAB3GAP2	A0A151P4V4	A0A151P3D4	Atlastin-3.	Rab3 GTPase-activating protein non-catalytic subunit isoform C.	0.459
ATL3	REEP1	A0A151P4V4	A0A151PA28	Atlastin-3.	Receptor expression-enhancing protein.	0.681
ATL3	REEP2	A0A151P4V4	A0A151MID4	Atlastin-3.	Receptor expression-enhancing protein.	0.548
ATL3	REEP3	A0A151P4V4	A0A151MUF6	Atlastin-3.	Receptor expression-enhancing protein.	0.742
KDM3B	REEP1	A0A151MI10	A0A151PA28	Lysine-specific demethylase 3B isoform A.	Receptor expression-enhancing protein.	0.539
KDM3B	REEP2	A0A151MI10	A0A151MID4	Lysine-specific demethylase 3B isoform A.	Receptor expression-enhancing protein.	0.557
KDM3B	REEP3	A0A151MI10	A0A151MUF6	Lysine-specific demethylase 3B isoform A.	Receptor expression-enhancing protein.	0.538
RAB18	RAB3GAP1	A0A151PCJ1	A0A151M0Q3	Ras-related protein Rab-18.	Rab3 GTPase-activating protein catalytic subunit.	0.853
RAB18	RAB3GAP2	A0A151PCJ1	A0A151P3D4	Ras-related protein Rab-18.	Rab3 GTPase-activating protein non-catalytic subunit isoform C.	0.848
RAB3GAP1	ATL1	A0A151M0Q3	A0A151N3F2	Rab3 GTPase-activating protein catalytic subunit.	GB1/RHD3-type G domain-containing protein.	0.472
RAB3GAP1	ATL3	A0A151M0Q3	A0A151P4V4	Rab3 GTPase-activating protein catalytic subunit.	Atlastin-3.	0.472
RAB3GAP1	RAB18	A0A151M0Q3	A0A151PCJ1	Rab3 GTPase-activating protein catalytic subunit.	Ras-related protein Rab-18.	0.853
RAB3GAP1	RAB3GAP2	A0A151M0Q3	A0A151P3D4	Rab3 GTPase-activating protein catalytic subunit.	Rab3 GTPase-activating protein non-catalytic subunit isoform C.	0.999
RAB3GAP1	REEP1	A0A151M0Q3	A0A151PA28	Rab3 GTPase-activating protein catalytic subunit.	Receptor expression-enhancing protein.	0.585