(58 nodes) Cadherin conserved site, and Vinculin family network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Y1Q_0016235	Uncharacterized protein. (240 aa)
	PKP4	Plakophilin-4 isoform C. (1185 aa)
	TMEM245	Transmembrane protein 245. (853 aa)
	Y1Q_0019580	B-cadherin-like. (610 aa)
	Y1Q_0002887	Uncharacterized protein. (454 aa)
	PCDH12	Protocadherin-12. (256 aa)
	Y1Q_0004639	Uncharacterized protein. (525 aa)
	PCDH17-2	Uncharacterized protein. (268 aa)
	Y1Q_0010417	Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (208 aa)
	SH3BP5L	SH3 domain-binding protein 5-like. (366 aa)
	Y1Q_0002117	Uncharacterized protein. (432 aa)
	CDH17	Cadherin-17. (875 aa)
	Y1Q_0004916	Uncharacterized protein. (383 aa)
	MEGF6-2	Uncharacterized protein. (1612 aa)
	CDH5	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins. (733 aa)
	CDH11	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (792 aa)
	MEGF6	Multiple epidermal growth factor-like domains protein 6 isoform B. (1597 aa)
	Y1Q_0007610	Uncharacterized protein. (86 aa)
	CTNNAL1	Alpha-catulin isoform B. (769 aa)
	Y1Q_0008560	Uncharacterized protein. (252 aa)
	LTBP3	Uncharacterized protein. (620 aa)
	CDH8	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (668 aa)
	CDH13	Cadherin-13. (712 aa)
	PCDH19	Uncharacterized protein. (459 aa)
	Y1Q_0007285	Uncharacterized protein. (403 aa)
	Y1Q_0004792	CA domain-containing protein. (155 aa)
	Y1Q_0004793	Protocadherin beta-15-like. (430 aa)
	Y1Q_0004794	CA domain-containing protein. (161 aa)
	Y1Q_0008449	CA domain-containing protein. (155 aa)
	Y1Q_0004791	Uncharacterized protein. (647 aa)
	Y1Q_0004799	Protocadherin alpha-11-like. (723 aa)
	Y1Q_0008450	Protocadherin gamma-B2-like. (510 aa)
	PCDHAC2	Protocadherin alpha-C2. (875 aa)
	Y1Q_0004790	Protocadherin beta-1-like. (391 aa)
	CCNRC01-2	Protocadherin alpha-7-like. (341 aa)
	Y1Q_0008452	Uncharacterized protein. (482 aa)
	Y1Q_0008451	Cadherin_2 domain-containing protein. (231 aa)
	ARVCF	Uncharacterized protein. (918 aa)
	PCDHGC3	Protocadherin gamma-A7-like. (390 aa)
	CDH4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (869 aa)
	Y1Q_0016189	Uncharacterized protein. (77 aa)
	CTNND2	Uncharacterized protein. (729 aa)
	CDH10	MHD domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (733 aa)
	CDH9	Uncharacterized protein. (426 aa)
	CDH6	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (735 aa)
	Y1Q_0019038	Protocadherin-16-like. (683 aa)
	Y1Q_0016187	Uncharacterized protein. (399 aa)
	Y1Q_0017448	Uncharacterized protein. (237 aa)
	CDH12	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (527 aa)
	CDH20	Cadherin-20; Cadherins are calcium-dependent cell adhesion proteins. (724 aa)
	Y1Q_0015287	Uncharacterized protein. (282 aa)
	Y1Q_0015290	Uncharacterized protein. (143 aa)
	Y1Q_0015289	Uncharacterized protein. (128 aa)
	Y1Q_0003700	Uncharacterized protein. (305 aa)
	LRRTM4-2	Uncharacterized protein. (518 aa)
	JUP	Uncharacterized protein. (718 aa)
	CDH15	Cadherin-15; Cadherins are calcium-dependent cell adhesion proteins. (621 aa)
	Y1Q_0014602	Uncharacterized protein. (779 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARVCF	CDH10	A0A151NRN7	A0A151P207	Uncharacterized protein.	MHD domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins.	0.448
ARVCF	CDH11	A0A151NRN7	A0A151N7C6	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.648
ARVCF	CDH12	A0A151NRN7	A0A151P2H9	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.511
ARVCF	CDH13	A0A151NRN7	A0A151NM54	Uncharacterized protein.	Cadherin-13.	0.698
ARVCF	CDH15	A0A151NRN7	A0A151PIW7	Uncharacterized protein.	Cadherin-15; Cadherins are calcium-dependent cell adhesion proteins.	0.698
ARVCF	CDH17	A0A151NRN7	A0A151MY69	Uncharacterized protein.	Cadherin-17.	0.677
ARVCF	CDH20	A0A151NRN7	A0A151P2J2	Uncharacterized protein.	Cadherin-20; Cadherins are calcium-dependent cell adhesion proteins.	0.623
ARVCF	CDH4	A0A151NRN7	A0A151NZ00	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.698
ARVCF	CDH5	A0A151NRN7	A0A151N7C5	Uncharacterized protein.	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.	0.790
ARVCF	CDH6	A0A151NRN7	A0A151P221	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.448
ARVCF	CDH8	A0A151NRN7	A0A151NLZ1	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.605
ARVCF	CDH9	A0A151NRN7	A0A151P218	Uncharacterized protein.	Uncharacterized protein.	0.545
ARVCF	CTNNAL1	A0A151NRN7	A0A151NCT1	Uncharacterized protein.	Alpha-catulin isoform B.	0.401
ARVCF	JUP	A0A151NRN7	A0A151PC76	Uncharacterized protein.	Uncharacterized protein.	0.717
ARVCF	Y1Q_0002887	A0A151NRN7	A0A151MCL9	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0004916	A0A151NRN7	A0A151MYD5	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0010417	A0A151NRN7	A0A151MLF8	Uncharacterized protein.	Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins.	0.646
ARVCF	Y1Q_0015287	A0A151NRN7	A0A151P3U7	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0015289	A0A151NRN7	A0A151P495	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0015290	A0A151NRN7	A0A151P453	Uncharacterized protein.	Uncharacterized protein.	0.639