(19 nodes) Cadherin binding network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PKP4	Plakophilin-4 isoform C. (1185 aa)
	Y1Q_0019580	B-cadherin-like. (610 aa)
	Y1Q_0002887	Uncharacterized protein. (454 aa)
	Y1Q_0010417	Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (208 aa)
	Y1Q_0004916	Uncharacterized protein. (383 aa)
	CDH5	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins. (733 aa)
	CDH11	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (792 aa)
	CDH13	Cadherin-13. (712 aa)
	ARVCF	Uncharacterized protein. (918 aa)
	CDH4	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (869 aa)
	Y1Q_0016189	Uncharacterized protein. (77 aa)
	CTNND2	Uncharacterized protein. (729 aa)
	CDH9	Uncharacterized protein. (426 aa)
	Y1Q_0016187	Uncharacterized protein. (399 aa)
	Y1Q_0015287	Uncharacterized protein. (282 aa)
	Y1Q_0015290	Uncharacterized protein. (143 aa)
	Y1Q_0015289	Uncharacterized protein. (128 aa)
	JUP	Uncharacterized protein. (718 aa)
	CDH15	Cadherin-15; Cadherins are calcium-dependent cell adhesion proteins. (621 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARVCF	CDH11	A0A151NRN7	A0A151N7C6	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.648
ARVCF	CDH13	A0A151NRN7	A0A151NM54	Uncharacterized protein.	Cadherin-13.	0.698
ARVCF	CDH15	A0A151NRN7	A0A151PIW7	Uncharacterized protein.	Cadherin-15; Cadherins are calcium-dependent cell adhesion proteins.	0.698
ARVCF	CDH4	A0A151NRN7	A0A151NZ00	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.698
ARVCF	CDH5	A0A151NRN7	A0A151N7C5	Uncharacterized protein.	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.	0.790
ARVCF	CDH9	A0A151NRN7	A0A151P218	Uncharacterized protein.	Uncharacterized protein.	0.545
ARVCF	JUP	A0A151NRN7	A0A151PC76	Uncharacterized protein.	Uncharacterized protein.	0.717
ARVCF	Y1Q_0002887	A0A151NRN7	A0A151MCL9	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0004916	A0A151NRN7	A0A151MYD5	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0010417	A0A151NRN7	A0A151MLF8	Uncharacterized protein.	Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins.	0.646
ARVCF	Y1Q_0015287	A0A151NRN7	A0A151P3U7	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0015289	A0A151NRN7	A0A151P495	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0015290	A0A151NRN7	A0A151P453	Uncharacterized protein.	Uncharacterized protein.	0.639
ARVCF	Y1Q_0019580	A0A151NRN7	A0A151MCJ9	Uncharacterized protein.	B-cadherin-like.	0.646
CDH11	ARVCF	A0A151N7C6	A0A151NRN7	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.648
CDH11	CDH13	A0A151N7C6	A0A151NM54	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin-13.	0.498
CDH11	CDH15	A0A151N7C6	A0A151PIW7	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin-15; Cadherins are calcium-dependent cell adhesion proteins.	0.431
CDH11	CDH4	A0A151N7C6	A0A151NZ00	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.450
CDH11	CDH5	A0A151N7C6	A0A151N7C5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.	0.445
CDH11	CDH9	A0A151N7C6	A0A151P218	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein.	0.456