STRINGSTRING
XRCC1 XRCC1 POLD1 POLD1 Y1Q_0011106 Y1Q_0011106 Y1Q_0020266 Y1Q_0020266 SMC6 SMC6 POLK POLK RBBP8-1 RBBP8-1 MUTYH MUTYH POT1 POT1 BRCA1 BRCA1 NEIL3 NEIL3 PCNA PCNA SDE2 SDE2 Y1Q_0007595 Y1Q_0007595 DDB1 DDB1 REV1 REV1 MSH6 MSH6 SIRT6 SIRT6 MSH2 MSH2 DCLRE1A DCLRE1A FANCG FANCG UNG UNG DCLRE1C DCLRE1C RECQL4 RECQL4 Y1Q_0024039 Y1Q_0024039 XRCC6 XRCC6 CREBBP CREBBP CREBBPA CREBBPA RAD23B RAD23B XPA XPA POLB POLB WRN WRN NTHL1 NTHL1 ERCC4 ERCC4 ERCC2 ERCC2 ERCC1 ERCC1 POLI POLI NEIL2 NEIL2 BLM BLM RPA3 RPA3 RAD23A RAD23A TP63 TP63 TP53BP1-1 TP53BP1-1 XPC XPC POLH POLH DDB2 DDB2 CRY2-2 CRY2-2 NEIL1 NEIL1 RPS3 RPS3 APEX1 APEX1 XRCC5 XRCC5 RPA1 RPA1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XRCC1DNA repair protein XRCC1-like. (608 aa)
POLD1DNA polymerase. (439 aa)
Y1Q_0011106Short transient receptor potential channel 2-like. (506 aa)
Y1Q_0020266SMC_N domain-containing protein. (1136 aa)
SMC6Structural maintenance of chromosomes protein 6. (1125 aa)
POLKDNA polymerase kappa isoform A. (651 aa)
RBBP8-1DNA endonuclease RBBP8 isoform B. (936 aa)
MUTYHAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (505 aa)
POT1Protection of telomeres protein 1. (821 aa)
BRCA1Breast cancer type 1 susceptibility protein. (832 aa)
NEIL3Endonuclease 8-like 3. (508 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
SDE2SDE2-like protein. (397 aa)
Y1Q_0007595DNA_pol_B_exo1 domain-containing protein. (86 aa)
DDB1DNA damage-binding protein 1. (1140 aa)
REV1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1160 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1340 aa)
SIRT6NAD-dependent protein deacetylase sirtuin-6. (357 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (937 aa)
DCLRE1ADNA cross-link repair 1A protein. (1011 aa)
FANCGFanconi anemia group G protein. (636 aa)
UNGUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (301 aa)
DCLRE1CProtein artemis isoform A. (722 aa)
RECQL4ATP-dependent DNA helicase Q4 isoform A. (1385 aa)
Y1Q_0024039KIX domain-containing protein. (131 aa)
XRCC6X-ray repair cross-complementing protein 6. (620 aa)
CREBBPCREB-binding protein isoform C. (2208 aa)
CREBBPACREB-binding protein isoform A. (1756 aa)
RAD23BUV excision repair RAD23-like protein B. (397 aa)
XPADNA repair protein complementing XP-A cells. (244 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (335 aa)
WRNWerner syndrome ATP-dependent helicase. (1443 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (377 aa)
ERCC4DNA repair endonuclease XPF. (903 aa)
ERCC2TFIIH basal transcription factor complex helicase XPD subunit. (795 aa)
ERCC1DNA excision repair protein ERCC-1. (329 aa)
POLIDNA polymerase iota isoform A. (755 aa)
NEIL2Endonuclease 8-like 2. (300 aa)
BLMBloom syndrome protein. (1213 aa)
RPA3Replication protein A subunit. (120 aa)
RAD23AUV excision repair RAD23-like protein A. (357 aa)
TP63Tumor protein 63 (p63); Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and auto-regulating transactivation inhibiting domains thus showing an isoform specific activity. May be required in conjunction with TP73/p73 for initiation of p53/TP53 dependent apoptosis in response to genotoxic insults and the presence of activated oncogenes. (730 aa)
TP53BP1-1Tumor suppressor p53-binding protein 1 isoform A. (2124 aa)
XPCDNA repair protein complementing XP-C cells. (955 aa)
POLHDNA polymerase eta. (707 aa)
DDB2DNA damage-binding protein 2. (517 aa)
CRY2-2Photolyase/cryptochrome alpha/beta domain-containing protein. (547 aa)
NEIL1Endonuclease 8-like 1. (437 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (278 aa)
APEX1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
XRCC5X-ray repair cross-complementing protein 5 isoform A. (857 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (584 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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