STRINGSTRING
TRERF1 TRERF1 TBL1X TBL1X SUDS3 SUDS3 Y1Q_0008697 Y1Q_0008697 MBD3 MBD3 MIER1 MIER1 BRMS1L BRMS1L SMARCAD1 SMARCAD1 HDAC3 HDAC3 MTA1-2 MTA1-2 SIRT6 SIRT6 SIRT2 SIRT2 MORF4L1 MORF4L1 PRDM5 PRDM5 HDAC10 HDAC10 HDAC4 HDAC4 RCOR1 RCOR1 HDAC8 HDAC8 PHB PHB RCOR3 RCOR3 ZNF541 ZNF541 MTA1 MTA1 MIER2-1 MIER2-1 SIRT1 SIRT1 NWD1 NWD1 ELK4 ELK4 GATAD2A GATAD2A ELMSAN1 ELMSAN1 RBBP4-2 RBBP4-2 SIRT7 SIRT7 TBR1 TBR1 HDAC2 HDAC2 MTA2 MTA2 HDAC7 HDAC7 HDAC1 HDAC1 REST REST HOPX HOPX HDAC9 HDAC9 EOMES EOMES TBL1XR1 TBL1XR1 HDAC6 HDAC6 Y1Q_0001537 Y1Q_0001537 GATAD2B GATAD2B MBD2 MBD2 HDAC11 HDAC11 RCOR2 RCOR2 RBBP4 RBBP4 MSL3 MSL3 Y1Q_0017147 Y1Q_0017147
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TRERF1Transcriptional-regulating factor 1 isoform B. (889 aa)
TBL1XUncharacterized protein. (525 aa)
SUDS3Sin3 histone deacetylase corepressor complex component SDS3. (336 aa)
Y1Q_0008697Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1020 aa)
MBD3Methyl-CpG-binding domain protein 3. (329 aa)
MIER1Mesoderm induction early response protein 1. (493 aa)
BRMS1LBreast cancer metastasis-suppressor 1-like protein. (323 aa)
SMARCAD1annotation not available (1108 aa)
HDAC3Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (428 aa)
MTA1-2Uncharacterized protein. (694 aa)
SIRT6NAD-dependent protein deacetylase sirtuin-6. (357 aa)
SIRT2NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (392 aa)
MORF4L1Mortality factor 4-like protein 1 isoform B. (348 aa)
PRDM5PR domain zinc finger protein 5 isoform C. (662 aa)
HDAC10Histone deacetylase 10. (686 aa)
HDAC4Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1005 aa)
RCOR1REST corepressor 1. (382 aa)
HDAC8Histone deacetylase 8. (366 aa)
PHBProhibitin. (273 aa)
RCOR3REST corepressor 3 isoform A. (604 aa)
ZNF541Zinc finger protein 541 isoform A. (912 aa)
MTA1Metastasis-associated protein MTA1. (590 aa)
MIER2-1Mesoderm induction early response protein 2 isoform D. (884 aa)
SIRT1NAD-dependent protein deacetylase sirtuin-1. (634 aa)
NWD1Tetraspanin. (2546 aa)
ELK4ETS domain-containing protein Elk-4. (505 aa)
GATAD2ATranscriptional repressor p66-alpha isoform C. (621 aa)
ELMSAN1ELM2 and SANT domain-containing protein 1. (678 aa)
RBBP4-2WD_REPEATS_REGION domain-containing protein. (425 aa)
SIRT7NAD-dependent protein deacetylase sirtuin-7. (403 aa)
TBR1T-box brain protein 1. (532 aa)
HDAC2Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
MTA2Uncharacterized protein. (676 aa)
HDAC7Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1002 aa)
HDAC1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (464 aa)
RESTRE1-silencing transcription factor. (913 aa)
HOPXHomeodomain-only protein. (105 aa)
HDAC9Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1072 aa)
EOMESEomesodermin-like protein isoform B. (404 aa)
TBL1XR1F-box-like/WD repeat-containing protein TBL1XR1. (513 aa)
HDAC6Histone deacetylase 6. (794 aa)
Y1Q_0001537HDAC_interact domain-containing protein. (1175 aa)
GATAD2BTranscriptional repressor p66-beta isoform B. (634 aa)
MBD2Methyl-CpG-binding domain protein 2. (222 aa)
HDAC11Histone deacetylase 11. (402 aa)
RCOR2REST corepressor 2. (424 aa)
RBBP4Histone-binding protein RBBP4. (424 aa)
MSL3Male-specific lethal 3-like protein. (523 aa)
Y1Q_0017147Transcriptional-regulating factor 1-like. (397 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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