6 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAF4	Transcription initiation factor TFIID subunit 4. (976 aa)
	ARNTL	Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform B. (651 aa)
	ARNT2	Uncharacterized protein. (749 aa)
	ARNT	Aryl hydrocarbon receptor nuclear translocator isoform A. (785 aa)
	TAF6-1	Transcription initiation factor TFIID subunit 6 isoform A. (666 aa)
	Y1Q_0007802	Transcription initiation factor TFIID subunit 4-like. (750 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TAF4	TAF6-1	A0A151NYQ4	A0A151MRT4	Transcription initiation factor TFIID subunit 4.	Transcription initiation factor TFIID subunit 6 isoform A.	0.969
TAF4	Y1Q_0007802	A0A151NYQ4	A0A151N785	Transcription initiation factor TFIID subunit 4.	Transcription initiation factor TFIID subunit 4-like.	0.900
TAF6-1	TAF4	A0A151MRT4	A0A151NYQ4	Transcription initiation factor TFIID subunit 6 isoform A.	Transcription initiation factor TFIID subunit 4.	0.969
TAF6-1	Y1Q_0007802	A0A151MRT4	A0A151N785	Transcription initiation factor TFIID subunit 6 isoform A.	Transcription initiation factor TFIID subunit 4-like.	0.969
Y1Q_0007802	TAF4	A0A151N785	A0A151NYQ4	Transcription initiation factor TFIID subunit 4-like.	Transcription initiation factor TFIID subunit 4.	0.900
Y1Q_0007802	TAF6-1	A0A151N785	A0A151MRT4	Transcription initiation factor TFIID subunit 4-like.	Transcription initiation factor TFIID subunit 6 isoform A.	0.969