(7 nodes) Protein hexamerization network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YME1L1	ATP-dependent zinc metalloprotease YME1L1 isoform A. (724 aa)
	Y1Q_0007547	Uncharacterized protein. (98 aa)
	LRRC8C-2	Pannexin_like domain-containing protein. (816 aa)
	LRRC8A	Pannexin_like domain-containing protein. (791 aa)
	PEO1	Twinkle protein, mitochondrial. (356 aa)
	UGDH	UDP-glucose 6-dehydrogenase. (305 aa)
	UGDH-2	UDPG_MGDP_dh_N domain-containing protein. (102 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LRRC8A	LRRC8C-2	A0A151MFG6	A0A151M557	Pannexin_like domain-containing protein.	Pannexin_like domain-containing protein.	0.945
LRRC8A	Y1Q_0007547	A0A151MFG6	A0A151M543	Pannexin_like domain-containing protein.	Uncharacterized protein.	0.684
LRRC8C-2	LRRC8A	A0A151M557	A0A151MFG6	Pannexin_like domain-containing protein.	Pannexin_like domain-containing protein.	0.945
LRRC8C-2	Y1Q_0007547	A0A151M557	A0A151M543	Pannexin_like domain-containing protein.	Uncharacterized protein.	0.597
Y1Q_0007547	LRRC8A	A0A151M543	A0A151MFG6	Uncharacterized protein.	Pannexin_like domain-containing protein.	0.684
Y1Q_0007547	LRRC8C-2	A0A151M543	A0A151M557	Uncharacterized protein.	Pannexin_like domain-containing protein.	0.597