STRINGSTRING
PDGFRA PDGFRA AMBRA1 AMBRA1 NSMF NSMF PPP2R4 PPP2R4 PINK1 PINK1 PPP1R7 PPP1R7 SYMPK SYMPK SYMPKL SYMPKL CNEP1R1 CNEP1R1 PPP1R14D-1 PPP1R14D-1 ITGA1 ITGA1 TMEM130 TMEM130 GNA12 GNA12 SPPL3 SPPL3 AGTR2 AGTR2 CDH5 CDH5 VRK3-1 VRK3-1 GBA GBA PTPRC PTPRC Y1Q_0020688 Y1Q_0020688 PPP1R15A PPP1R15A Y1Q_0023392 Y1Q_0023392 MAGI2 MAGI2 Y1Q_0023488 Y1Q_0023488 ANKLE2 ANKLE2 LRRC43-1 LRRC43-1 TGFB1 TGFB1 CDCA2-1 CDCA2-1 LRRC46 LRRC46 SMPD1 SMPD1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PDGFRAPlatelet-derived growth factor receptor alpha; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1097 aa)
AMBRA1Activating molecule in BECN1-regulated autophagy protein 1 isoform A. (1224 aa)
NSMFNMDA receptor synaptonuclear signaling and neuronal migration factor isoform A. (522 aa)
PPP2R4Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (321 aa)
PINK1Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the arginase family. (851 aa)
PPP1R7Protein phosphatase 1 regulatory subunit 7 isoform C. (388 aa)
SYMPKSymplekin. (702 aa)
SYMPKLSymplekin. (501 aa)
CNEP1R1Nuclear envelope phosphatase-regulatory subunit 1. (125 aa)
PPP1R14D-1Protein phosphatase 1 regulatory subunit 14D isoform B. (126 aa)
ITGA1VWFA domain-containing protein; Belongs to the integrin alpha chain family. (1137 aa)
TMEM130Transmembrane protein 130. (487 aa)
GNA12Guanine nucleotide-binding protein subunit alpha-12 isoform A. (383 aa)
SPPL3Signal peptide peptidase-like 3. (384 aa)
AGTR2Type-2 angiotensin II receptor; Belongs to the G-protein coupled receptor 1 family. (369 aa)
CDH5Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins. (733 aa)
VRK3-1Inactive serine/threonine-protein kinase VRK3 isoform A. (407 aa)
GBAGlucosylceramidase. (779 aa)
PTPRCReceptor-type tyrosine-protein phosphatase C isoform D. (1209 aa)
Y1Q_0020688Glucosylceramidase. (347 aa)
PPP1R15AProtein phosphatase 1 regulatory subunit 15A. (374 aa)
Y1Q_0023392PDZ domain-containing protein. (102 aa)
MAGI2Uncharacterized protein. (1393 aa)
Y1Q_0023488Centriolin-like. (467 aa)
ANKLE2Ankyrin repeat and LEM domain-containing protein 2. (820 aa)
LRRC43-1Leucine-rich repeat-containing protein 43 isoform B. (599 aa)
TGFB1TGF_BETA_2 domain-containing protein. (242 aa)
CDCA2-1Cell division cycle-associated protein 2 isoform A. (814 aa)
LRRC46Leucine-rich repeat-containing protein 46. (333 aa)
SMPD1Sphingomyelin phosphodiesterase. (287 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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