(23 nodes) Outer dynein arm assembly network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCDC151	Coiled-coil domain-containing protein 151. (545 aa)
	LRRC6	TilB-like protein. (475 aa)
	TTC25	2',3'-cyclic-nucleotide 3'-phosphodiesterase. (1005 aa)
	CCDC103	Coiled-coil domain-containing protein 103 isoform B. (288 aa)
	ARMC4	Armadillo repeat-containing protein 4. (1075 aa)
	DNAAF2	Protein kintoun. (351 aa)
	Y1Q_0013495	DHC_N1 domain-containing protein. (491 aa)
	DNAH8	Uncharacterized protein. (3362 aa)
	Y1Q_0013496	DHC_N1 domain-containing protein. (688 aa)
	DNAH5	Uncharacterized protein. (4623 aa)
	DNAI2	Dynein intermediate chain 2, axonemal. (625 aa)
	CCDC63	Coiled-coil domain-containing protein 63. (552 aa)
	PIH1D3	Protein PIH1D3. (197 aa)
	CCDC114	Coiled-coil domain-containing protein 114. (608 aa)
	Y1Q_0015404	Uncharacterized protein. (4574 aa)
	CUNH16orf71	NDK domain-containing protein. (1729 aa)
	DNAAF5	Dynein assembly factor 5, axonemal isoform A. (742 aa)
	DNAL1	Dynein light chain 1, axonemal. (194 aa)
	EFCAB1	EF-hand calcium-binding domain-containing protein 1. (208 aa)
	DNAAF1-1	Dynein assembly factor 1, axonemal. (755 aa)
	ZMYND10	Zinc finger MYND domain-containing protein 10 isoform A. (454 aa)
	DYX1C1	Dyslexia susceptibility 1 candidate 1 protein. (369 aa)
	DNAI1	Dynein intermediate chain 1, axonemal. (711 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC4	CCDC103	A0A151PCU7	A0A151PC70	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 103 isoform B.	0.409
ARMC4	CCDC114	A0A151PCU7	A0A151NK99	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 114.	0.727
ARMC4	CCDC151	A0A151PCU7	A0A151P4K7	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 151.	0.846
ARMC4	CCDC63	A0A151PCU7	A0A151NSE3	Armadillo repeat-containing protein 4.	Coiled-coil domain-containing protein 63.	0.727
ARMC4	DNAAF1-1	A0A151PCU7	A0A151MLK1	Armadillo repeat-containing protein 4.	Dynein assembly factor 1, axonemal.	0.548
ARMC4	DNAAF5	A0A151PCU7	A0A151N1N6	Armadillo repeat-containing protein 4.	Dynein assembly factor 5, axonemal isoform A.	0.544
ARMC4	DNAI1	A0A151PCU7	A0A151M1R5	Armadillo repeat-containing protein 4.	Dynein intermediate chain 1, axonemal.	0.451
ARMC4	DNAI2	A0A151PCU7	A0A151NVX0	Armadillo repeat-containing protein 4.	Dynein intermediate chain 2, axonemal.	0.573
ARMC4	DYX1C1	A0A151PCU7	A0A151M9T8	Armadillo repeat-containing protein 4.	Dyslexia susceptibility 1 candidate 1 protein.	0.441
ARMC4	EFCAB1	A0A151PCU7	A0A151MQ46	Armadillo repeat-containing protein 4.	EF-hand calcium-binding domain-containing protein 1.	0.763
ARMC4	LRRC6	A0A151PCU7	A0A151P823	Armadillo repeat-containing protein 4.	TilB-like protein.	0.683
ARMC4	TTC25	A0A151PCU7	A0A151PC66	Armadillo repeat-containing protein 4.	2',3'-cyclic-nucleotide 3'-phosphodiesterase.	0.851
ARMC4	ZMYND10	A0A151PCU7	A0A151MEK3	Armadillo repeat-containing protein 4.	Zinc finger MYND domain-containing protein 10 isoform A.	0.605
CCDC103	ARMC4	A0A151PC70	A0A151PCU7	Coiled-coil domain-containing protein 103 isoform B.	Armadillo repeat-containing protein 4.	0.409
CCDC103	CCDC151	A0A151PC70	A0A151P4K7	Coiled-coil domain-containing protein 103 isoform B.	Coiled-coil domain-containing protein 151.	0.452
CCDC103	DNAAF1-1	A0A151PC70	A0A151MLK1	Coiled-coil domain-containing protein 103 isoform B.	Dynein assembly factor 1, axonemal.	0.571
CCDC103	DNAAF5	A0A151PC70	A0A151N1N6	Coiled-coil domain-containing protein 103 isoform B.	Dynein assembly factor 5, axonemal isoform A.	0.549
CCDC103	DNAI1	A0A151PC70	A0A151M1R5	Coiled-coil domain-containing protein 103 isoform B.	Dynein intermediate chain 1, axonemal.	0.565
CCDC103	DNAI2	A0A151PC70	A0A151NVX0	Coiled-coil domain-containing protein 103 isoform B.	Dynein intermediate chain 2, axonemal.	0.589
CCDC103	DYX1C1	A0A151PC70	A0A151M9T8	Coiled-coil domain-containing protein 103 isoform B.	Dyslexia susceptibility 1 candidate 1 protein.	0.542