STRINGSTRING
Y1Q_0021612 Y1Q_0021612 JMJD4-1 JMJD4-1 SETX SETX EIF5A2 EIF5A2 PLEK PLEK STMN2 STMN2 EIF5A EIF5A TMEM130 TMEM130 SMCR8 SMCR8 GBA GBA DSTN DSTN CARMIL1 CARMIL1 Y1Q_0020688 Y1Q_0020688 RLTPR RLTPR TNF TNF NES NES FYCO1 FYCO1 BNIP3 BNIP3 CALCOCO2 CALCOCO2 WDR1 WDR1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Y1Q_0021612DUF4592 domain-containing protein. (1389 aa)
JMJD4-1JmjC domain-containing protein 4 isoform A. (450 aa)
SETXPutative helicase senataxin. (1732 aa)
EIF5A2Eukaryotic translation initiation factor 5A. (153 aa)
PLEKPleckstrin. (352 aa)
STMN2Stathmin; Belongs to the stathmin family. (179 aa)
EIF5AEukaryotic translation initiation factor 5A. (172 aa)
TMEM130Transmembrane protein 130. (487 aa)
SMCR8Smith-Magenis syndrome chromosomal region candidate 8 protein. (935 aa)
GBAGlucosylceramidase. (779 aa)
DSTNDestrin; Belongs to the actin-binding proteins ADF family. (165 aa)
CARMIL1Uncharacterized protein. (1426 aa)
Y1Q_0020688Glucosylceramidase. (347 aa)
RLTPRLeucine-rich repeat-containing protein 16C isoform C. (1524 aa)
TNFTumor necrosis factor. (231 aa)
NESNestin; Belongs to the intermediate filament family. (1759 aa)
FYCO1FYVE and coiled-coil domain-containing protein 1. (1545 aa)
BNIP3BCL2/adenovirus E1B protein-interacting protein 3. (200 aa)
CALCOCO2Calcium-binding and coiled-coil domain-containing protein 2 isoform B. (583 aa)
WDR1WD repeat-containing protein 1. (607 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.