15 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHD1	Uncharacterized protein. (1812 aa)
	SP1	Transcription factor Sp1. (746 aa)
	Y1Q_0024039	KIX domain-containing protein. (131 aa)
	CREBBP	CREB-binding protein isoform C. (2208 aa)
	CTDP1	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (956 aa)
	CUNH17orf64	DUF4208 domain-containing protein. (262 aa)
	TFAP4	Transcription factor AP-4. (344 aa)
	SMARCB1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (386 aa)
	CCNT1	Cyclin-T1; Belongs to the cyclin family. (592 aa)
	HPN	Serine protease hepsin; Belongs to the peptidase S1 family. (424 aa)
	LEF1	Lymphoid enhancer-binding factor 1 isoform B. (391 aa)
	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1. (293 aa)
	SNW1	SNW domain-containing protein 1. (536 aa)
	c-jun	Transcription factor AP-1; Belongs to the bZIP family. (320 aa)
	JUND	BZIP domain-containing protein. (87 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNT1	CTDP1	A0A151MUI7	A0A151NFJ1	Cyclin-T1; Belongs to the cyclin family.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.707
CCNT1	SP1	A0A151MUI7	A0A151P4W4	Cyclin-T1; Belongs to the cyclin family.	Transcription factor Sp1.	0.605
CREBBP	JUND	A0A151NHH3	A0A151PGU2	CREB-binding protein isoform C.	BZIP domain-containing protein.	0.753
CREBBP	LEF1	A0A151NHH3	A0A151MJ72	CREB-binding protein isoform C.	Lymphoid enhancer-binding factor 1 isoform B.	0.963
CREBBP	SNW1	A0A151NHH3	A0A151M5I2	CREB-binding protein isoform C.	SNW domain-containing protein 1.	0.651
CREBBP	SP1	A0A151NHH3	A0A151P4W4	CREB-binding protein isoform C.	Transcription factor Sp1.	0.928
CREBBP	c-jun	A0A151NHH3	Q4W7I0	CREB-binding protein isoform C.	Transcription factor AP-1; Belongs to the bZIP family.	0.753
CTDP1	CCNT1	A0A151NFJ1	A0A151MUI7	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Cyclin-T1; Belongs to the cyclin family.	0.707
JUND	CREBBP	A0A151PGU2	A0A151NHH3	BZIP domain-containing protein.	CREB-binding protein isoform C.	0.753
JUND	SMARCB1	A0A151PGU2	A0A151N493	BZIP domain-containing protein.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.445
JUND	SP1	A0A151PGU2	A0A151P4W4	BZIP domain-containing protein.	Transcription factor Sp1.	0.662
JUND	Y1Q_0024039	A0A151PGU2	A0A151NHX4	BZIP domain-containing protein.	KIX domain-containing protein.	0.753
LEF1	CREBBP	A0A151MJ72	A0A151NHH3	Lymphoid enhancer-binding factor 1 isoform B.	CREB-binding protein isoform C.	0.963
LEF1	Y1Q_0024039	A0A151MJ72	A0A151NHX4	Lymphoid enhancer-binding factor 1 isoform B.	KIX domain-containing protein.	0.653
SMARCB1	JUND	A0A151N493	A0A151PGU2	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	BZIP domain-containing protein.	0.445
SMARCB1	c-jun	A0A151N493	Q4W7I0	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	Transcription factor AP-1; Belongs to the bZIP family.	0.445
SNW1	CREBBP	A0A151M5I2	A0A151NHH3	SNW domain-containing protein 1.	CREB-binding protein isoform C.	0.651
SNW1	Y1Q_0024039	A0A151M5I2	A0A151NHX4	SNW domain-containing protein 1.	KIX domain-containing protein.	0.651
SP1	CCNT1	A0A151P4W4	A0A151MUI7	Transcription factor Sp1.	Cyclin-T1; Belongs to the cyclin family.	0.605
SP1	CREBBP	A0A151P4W4	A0A151NHH3	Transcription factor Sp1.	CREB-binding protein isoform C.	0.928