STRINGSTRING
CALB1 CALB1 ATF4-2 ATF4-2 PHACTR4 PHACTR4 TDRD7 TDRD7 CRB1 CRB1 IFT172 IFT172 NAGLU NAGLU NF1 NF1 MFN2-2 MFN2-2 SDK2 SDK2 DLL3 DLL3 SOX8 SOX8 SDK1 SDK1 Y1Q_0018485 Y1Q_0018485 ZHX2 ZHX2 FAT3 FAT3 CABP4 CABP4 RPGRIP1L RPGRIP1L MFSD2A MFSD2A EPHA2 EPHA2 JAG1-2 JAG1-2 CRB2 CRB2 PVRL3L PVRL3L ALCAM ALCAM PVRL3-1 PVRL3-1 COL8A1 COL8A1 TH TH USH1C USH1C PAX6 PAX6 FJX1 FJX1 STRA6 STRA6 ALDH1A3 ALDH1A3 MEGF11 MEGF11 RORB RORB NTRK2 NTRK2 Y1Q_0008983 Y1Q_0008983 NRL NRL AHI1 AHI1 DLL1 DLL1 SP3 SP3 ATF4-1 ATF4-1 Y1Q_0008411 Y1Q_0008411 BAX BAX THY1 THY1 PVRL1 PVRL1 Y1Q_0004782 Y1Q_0004782 FOXN4 FOXN4 VAX1 VAX1 CNTF CNTF TBC1D20 TBC1D20 LRP5 LRP5 BHLHE23 BHLHE23 PDE6B PDE6B GLI3 GLI3 CTNNB1 CTNNB1 BAK1 BAK1 Y1Q_0016618 Y1Q_0016618 TTC8 TTC8 KDR KDR FAT3A FAT3A ZEB1 ZEB1 AQP1 AQP1 Y1Q_0014007 Y1Q_0014007 PTF1A PTF1A FGF2 FGF2 TSPAN12 TSPAN12 FRS2 FRS2 Y1Q_0015744 Y1Q_0015744 THL THL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CALB1Calbindin. (262 aa)
ATF4-2Cyclic AMP-dependent transcription factor ATF-4. (124 aa)
PHACTR4Phosphatase and actin regulator. (738 aa)
TDRD7Tudor domain-containing protein 7 isoform B. (1114 aa)
CRB1Crumbs-like protein 1 isoform B. (967 aa)
IFT172Intraflagellar transport 172-like protein. (1389 aa)
NAGLUAlpha-N-acetylglucosaminidase. (620 aa)
NF1Neurofibromin isoform B. (2879 aa)
MFN2-2Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (737 aa)
SDK2Uncharacterized protein. (1668 aa)
DLL3Delta-like protein 3. (230 aa)
SOX8Transcription factor SOX-8. (471 aa)
SDK1Uncharacterized protein. (2113 aa)
Y1Q_0018485Paired box protein Pax-6-like. (281 aa)
ZHX2Zinc fingers and homeoboxes protein 2. (784 aa)
FAT3Uncharacterized protein. (4529 aa)
CABP4Calcium-binding protein 2. (240 aa)
RPGRIP1LProtein fantom. (1273 aa)
MFSD2ASodium-dependent lysophosphatidylcholine symporter 1 isoform A. (503 aa)
EPHA2Uncharacterized protein. (979 aa)
JAG1-2Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1147 aa)
CRB2Crumbs-like protein 2 isoform A. (1508 aa)
PVRL3LNectin-3. (210 aa)
ALCAMCD166 antigen. (582 aa)
PVRL3-1Poliovirus receptor-related protein 3 isoform B. (171 aa)
COL8A1Collagen alpha-1(VIII) chain. (761 aa)
THBH4_AAA_HYDROXYL_2 domain-containing protein. (531 aa)
USH1CHarmonin isoform B. (556 aa)
PAX6Paired box protein Pax-6. (516 aa)
FJX1Four-jointed box protein 1. (229 aa)
STRA6Stimulated by retinoic acid 6 protein-like protein. (720 aa)
ALDH1A3Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (514 aa)
MEGF11Uncharacterized protein. (1144 aa)
RORBUncharacterized protein. (459 aa)
NTRK2Tyrosine-protein kinase receptor. (817 aa)
Y1Q_0008983TBC1 domain family member 20-like. (285 aa)
NRLNeural retina-specific leucine zipper protein. (239 aa)
AHI1Jouberin isoform A. (1231 aa)
DLL1Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (735 aa)
SP3Transcription factor Sp3. (766 aa)
ATF4-1Cyclic AMP-dependent transcription factor ATF-4. (117 aa)
Y1Q_0008411Apoptosis regulator BAX-like. (187 aa)
BAXApoptosis regulator BAX. (209 aa)
THY1Thy-1 membrane glycoprotein. (195 aa)
PVRL1Nectin-1. (710 aa)
Y1Q_0004782Uncharacterized protein. (1107 aa)
FOXN4Forkhead box protein N4 isoform B. (517 aa)
VAX1Ventral anterior homeobox 1. (266 aa)
CNTFCiliary neurotrophic factor. (194 aa)
TBC1D20TBC1 domain family member 20. (389 aa)
LRP5Low-density lipoprotein receptor-related protein; Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Belongs to the LDLR family. (1594 aa)
BHLHE23Class E basic helix-loop-helix protein 23. (202 aa)
PDE6BPhosphodiesterase. (864 aa)
GLI3Uncharacterized protein. (1572 aa)
CTNNB1Catenin beta-1 isoform B. (783 aa)
BAK1Bcl-2-like proteinous antagonist/killer. (222 aa)
Y1Q_0016618Uncharacterized protein. (867 aa)
TTC8Tetratricopeptide repeat protein 8. (511 aa)
KDRUncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1353 aa)
FAT3AProtocadherin Fat 3. (1109 aa)
ZEB1Uncharacterized protein. (1105 aa)
AQP1Aquaporin-1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (271 aa)
Y1Q_0014007Uncharacterized protein. (272 aa)
PTF1APancreas transcription factor 1 subunit alpha. (189 aa)
FGF2Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
TSPAN12Tetraspanin. (305 aa)
FRS2Fibroblast growth factor receptor substrate 2. (510 aa)
Y1Q_0015744Intraflagellar transport 172-like protein. (385 aa)
THLTyrosine 3-monooxygenase-like. (463 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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