(3 nodes) Determination of digestive tract left/right asymmetry network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DNAAF1-1	Dynein assembly factor 1, axonemal. (755 aa)
	CCDC40	Coiled-coil domain-containing protein 40. (1131 aa)
	CCDC103	Coiled-coil domain-containing protein 103 isoform B. (288 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC103	CCDC40	A0A151PC70	A0A151NKJ4	Coiled-coil domain-containing protein 103 isoform B.	Coiled-coil domain-containing protein 40.	0.561
CCDC103	DNAAF1-1	A0A151PC70	A0A151MLK1	Coiled-coil domain-containing protein 103 isoform B.	Dynein assembly factor 1, axonemal.	0.571
CCDC40	CCDC103	A0A151NKJ4	A0A151PC70	Coiled-coil domain-containing protein 40.	Coiled-coil domain-containing protein 103 isoform B.	0.561
CCDC40	DNAAF1-1	A0A151NKJ4	A0A151MLK1	Coiled-coil domain-containing protein 40.	Dynein assembly factor 1, axonemal.	0.669
DNAAF1-1	CCDC103	A0A151MLK1	A0A151PC70	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 103 isoform B.	0.571
DNAAF1-1	CCDC40	A0A151MLK1	A0A151NKJ4	Dynein assembly factor 1, axonemal.	Coiled-coil domain-containing protein 40.	0.669