(13 nodes) Presynapse assembly network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Y1Q_0019411	COesterase domain-containing protein. (181 aa)
	NLGN4X	Neuroligin-4, X-linked isoform B. (533 aa)
	Y1Q_0010673	COesterase domain-containing protein. (237 aa)
	IL1RAPL2	X-linked interleukin-1 receptor accessory protein-like 2 isoform A. (593 aa)
	PCLO	Protein piccolo isoform D. (659 aa)
	IL1RAPL1	TIR domain-containing protein. (213 aa)
	EFNB2	Ephrin-B2; Belongs to the ephrin family. (333 aa)
	NLGN4X-2	COesterase domain-containing protein. (812 aa)
	LRRTM4	Leucine-rich repeat transmembrane neuronal protein 4. (513 aa)
	NLGN3	COesterase domain-containing protein. (610 aa)
	NLGN2	COesterase domain-containing protein. (826 aa)
	CNTN5	Uncharacterized protein. (1100 aa)
	Y1Q_0000001	COesterase domain-containing protein. (130 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NLGN3	Y1Q_0000001	A0A151P584	A0A151PGX1	COesterase domain-containing protein.	COesterase domain-containing protein.	0.429
NLGN3	Y1Q_0010673	A0A151P584	A0A151M6G2	COesterase domain-containing protein.	COesterase domain-containing protein.	0.909
NLGN3	Y1Q_0019411	A0A151P584	A0A151MPN7	COesterase domain-containing protein.	COesterase domain-containing protein.	0.950
NLGN4X	Y1Q_0000001	A0A151M6E5	A0A151PGX1	Neuroligin-4, X-linked isoform B.	COesterase domain-containing protein.	0.427
NLGN4X	Y1Q_0010673	A0A151M6E5	A0A151M6G2	Neuroligin-4, X-linked isoform B.	COesterase domain-containing protein.	0.951
NLGN4X	Y1Q_0019411	A0A151M6E5	A0A151MPN7	Neuroligin-4, X-linked isoform B.	COesterase domain-containing protein.	0.749
Y1Q_0000001	NLGN3	A0A151PGX1	A0A151P584	COesterase domain-containing protein.	COesterase domain-containing protein.	0.429
Y1Q_0000001	NLGN4X	A0A151PGX1	A0A151M6E5	COesterase domain-containing protein.	Neuroligin-4, X-linked isoform B.	0.427
Y1Q_0010673	NLGN3	A0A151M6G2	A0A151P584	COesterase domain-containing protein.	COesterase domain-containing protein.	0.909
Y1Q_0010673	NLGN4X	A0A151M6G2	A0A151M6E5	COesterase domain-containing protein.	Neuroligin-4, X-linked isoform B.	0.951
Y1Q_0019411	NLGN3	A0A151MPN7	A0A151P584	COesterase domain-containing protein.	COesterase domain-containing protein.	0.950
Y1Q_0019411	NLGN4X	A0A151MPN7	A0A151M6E5	COesterase domain-containing protein.	Neuroligin-4, X-linked isoform B.	0.749