42 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HLTF	Helicase-like transcription factor. (990 aa)
	CUNH17orf64	DUF4208 domain-containing protein. (262 aa)
	RSF1	Remodeling and spacing factor 1. (1444 aa)
	CHD3-2	Uncharacterized protein. (1966 aa)
	CHD5	Uncharacterized protein. (1864 aa)
	RAD54B	DNA repair and recombination protein RAD54B isoform B. (984 aa)
	INO80	DNA helicase INO80. (1539 aa)
	HELLS	Lymphoid-specific helicase isoform B. (844 aa)
	Y1Q_0021242	Uncharacterized protein. (2146 aa)
	Y1Q_0003810	Uncharacterized protein. (2463 aa)
	ERCC6	DNA excision repair protein ERCC-6. (1491 aa)
	CHD7	Chromodomain-helicase-DNA-binding protein 7 isoform A. (2554 aa)
	RAD54L2	Helicase ARIP4 isoform A. (1433 aa)
	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like. (887 aa)
	TTF2	Transcription termination factor 2. (1196 aa)
	CHD3	Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
	CHD2	Chromodomain-helicase-DNA-binding protein 2 isoform A. (1799 aa)
	SMARCA2	Putative global transcription activator SNF2L2. (1430 aa)
	ERCC6L2	DNA excision repair protein ERCC-6-like 2. (1396 aa)
	SMARCA5-2	Uncharacterized protein. (1027 aa)
	SMARCAL1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (792 aa)
	Y1Q_0011682	Uncharacterized protein. (82 aa)
	ZRANB3	DNA annealing helicase and endonuclease ZRANB3. (1022 aa)
	SRCAP	Helicase SRCAP. (1772 aa)
	ERCC6L	DNA excision repair protein ERCC-6-like. (694 aa)
	CHD1	Uncharacterized protein. (1812 aa)
	Y1Q_0008896	Uncharacterized protein. (867 aa)
	BTAF1	TATA-binding protein-associated factor 172. (1844 aa)
	AIRE	Autoimmune regulator isoform B. (519 aa)
	SMARCA4	Uncharacterized protein. (1610 aa)
	Y1Q_0018642	Uncharacterized protein. (841 aa)
	Y1Q_0018641	Myb-like domain-containing protein. (783 aa)
	MPHOSPH9	M-phase phosphoprotein 9 isoform B. (1194 aa)
	EP400	E1A-binding protein p400 isoform A. (3038 aa)
	Y1Q_0004780	Uncharacterized protein. (200 aa)
	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1053 aa)
	ATRX	Transcriptional regulator ATRX. (2331 aa)
	SMARCAD1	annotation not available (1108 aa)
	SHPRH	E3 ubiquitin-protein ligase SHPRH. (1616 aa)
	CECR2	Cat eye syndrome critical region protein 2. (1469 aa)
	RAD54L	DNA repair and recombination protein RAD54-like. (757 aa)
	CHD8	Uncharacterized protein. (2136 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIRE	ERCC6	A0A151NUV3	A0A151MKX5	Autoimmune regulator isoform B.	DNA excision repair protein ERCC-6.	0.438
ATRX	RAD54B	A0A151NNF0	A0A151MY60	Transcriptional regulator ATRX.	DNA repair and recombination protein RAD54B isoform B.	0.625
ATRX	RSF1	A0A151NNF0	A0A151N4U4	Transcriptional regulator ATRX.	Remodeling and spacing factor 1.	0.554
BTAF1	CHD1	A0A151NZH4	A0A151PIZ2	TATA-binding protein-associated factor 172.	Uncharacterized protein.	0.450
BTAF1	CHD1L	A0A151NZH4	A0A151MD12	TATA-binding protein-associated factor 172.	Chromodomain-helicase-DNA-binding protein 1-like.	0.441
BTAF1	ERCC6L2	A0A151NZH4	A0A151M865	TATA-binding protein-associated factor 172.	DNA excision repair protein ERCC-6-like 2.	0.405
BTAF1	HELLS	A0A151NZH4	A0A151MSU0	TATA-binding protein-associated factor 172.	Lymphoid-specific helicase isoform B.	0.436
BTAF1	INO80	A0A151NZH4	A0A151MV21	TATA-binding protein-associated factor 172.	DNA helicase INO80.	0.415
BTAF1	SMARCA2	A0A151NZH4	A0A151M8I6	TATA-binding protein-associated factor 172.	Putative global transcription activator SNF2L2.	0.413
BTAF1	SMARCA4	A0A151NZH4	A0A151NU66	TATA-binding protein-associated factor 172.	Uncharacterized protein.	0.415
BTAF1	SMARCA5	A0A151NZH4	A0A151NNH1	TATA-binding protein-associated factor 172.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.585
BTAF1	SMARCA5-2	A0A151NZH4	A0A151M7J7	TATA-binding protein-associated factor 172.	Uncharacterized protein.	0.584
CECR2	CHD1L	A0A151NIJ3	A0A151MD12	Cat eye syndrome critical region protein 2.	Chromodomain-helicase-DNA-binding protein 1-like.	0.554
CECR2	ERCC6	A0A151NIJ3	A0A151MKX5	Cat eye syndrome critical region protein 2.	DNA excision repair protein ERCC-6.	0.562
CECR2	HELLS	A0A151NIJ3	A0A151MSU0	Cat eye syndrome critical region protein 2.	Lymphoid-specific helicase isoform B.	0.559
CECR2	RSF1	A0A151NIJ3	A0A151N4U4	Cat eye syndrome critical region protein 2.	Remodeling and spacing factor 1.	0.443
CECR2	SMARCA5	A0A151NIJ3	A0A151NNH1	Cat eye syndrome critical region protein 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.887
CECR2	SMARCA5-2	A0A151NIJ3	A0A151M7J7	Cat eye syndrome critical region protein 2.	Uncharacterized protein.	0.887
CHD1	BTAF1	A0A151PIZ2	A0A151NZH4	Uncharacterized protein.	TATA-binding protein-associated factor 172.	0.450
CHD1	SMARCA5	A0A151PIZ2	A0A151NNH1	Uncharacterized protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.	0.435