23 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARID4A	AT-rich interactive domain-containing protein 4A isoform A. (951 aa)
	LOXL3	Lysyl oxidase-like protein 3. (775 aa)
	WDR43	WD repeat-containing protein 43 isoform A. (595 aa)
	BCL7A	B-cell CLL/lymphoma 7 protein family member A. (186 aa)
	SMO	Smoothened-like protein; Belongs to the G-protein coupled receptor Fz/Smo family. (804 aa)
	LOXL4	Lysyl oxidase-like protein 4. (342 aa)
	PTN	Pleiotrophin. (165 aa)
	ELAVL1	ELAV-like protein; Belongs to the RRM elav family. (334 aa)
	WNT9B	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
	LOXL3-2	Uncharacterized protein. (513 aa)
	HNF1B	Homeobox domain-containing protein. (562 aa)
	SAV1	Salvador-like protein 1. (391 aa)
	ZNF706	Zinc finger protein 706. (87 aa)
	CNOT1	CCR4-NOT transcription complex subunit 1 isoform B. (2350 aa)
	REST	RE1-silencing transcription factor. (913 aa)
	PRDM14	PR domain zinc finger protein 14. (193 aa)
	TP63	Tumor protein 63 (p63); Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and auto-regulating transactivation inhibiting domains thus showing an isoform specific activity. May be required in conjunction with TP73/p73 for initiation of p53/TP53 dependent apoptosis in response to genotoxic insults and the presence of activated oncogenes. (730 aa)
	ZC3H13-1	Zinc finger CCCH domain-containing protein 13 isoform A. (1355 aa)
	CNOT3-1	CCR4-NOT transcription complex subunit 3. (456 aa)
	CNOT3-2	CCR4-NOT transcription complex subunit 3. (264 aa)
	TAF6L	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor subunit 6L. (629 aa)
	HMGA2	High mobility group protein HMGI-C. (112 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2 isoform A. (561 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	REST	A0A151M1U2	A0A151MPP5	AT-rich interactive domain-containing protein 4A isoform A.	RE1-silencing transcription factor.	0.477
CNOT1	CNOT2	A0A151MSK9	A0A151PFE7	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 2 isoform A.	0.997
CNOT1	CNOT3-1	A0A151MSK9	A0A151M4T2	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT1	CNOT3-2	A0A151MSK9	A0A151M4S5	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT2	CNOT1	A0A151PFE7	A0A151MSK9	CCR4-NOT transcription complex subunit 2 isoform A.	CCR4-NOT transcription complex subunit 1 isoform B.	0.997
CNOT2	CNOT3-1	A0A151PFE7	A0A151M4T2	CCR4-NOT transcription complex subunit 2 isoform A.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT2	CNOT3-2	A0A151PFE7	A0A151M4S5	CCR4-NOT transcription complex subunit 2 isoform A.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT3-1	CNOT1	A0A151M4T2	A0A151MSK9	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 1 isoform B.	0.971
CNOT3-1	CNOT2	A0A151M4T2	A0A151PFE7	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 2 isoform A.	0.971
CNOT3-1	CNOT3-2	A0A151M4T2	A0A151M4S5	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 3.	0.945
CNOT3-2	CNOT1	A0A151M4S5	A0A151MSK9	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 1 isoform B.	0.971
CNOT3-2	CNOT2	A0A151M4S5	A0A151PFE7	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 2 isoform A.	0.971
CNOT3-2	CNOT3-1	A0A151M4S5	A0A151M4T2	CCR4-NOT transcription complex subunit 3.	CCR4-NOT transcription complex subunit 3.	0.945
HNF1B	WNT9B	A0A151N5Z1	A0A151N9B7	Homeobox domain-containing protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.564
REST	ARID4A	A0A151MPP5	A0A151M1U2	RE1-silencing transcription factor.	AT-rich interactive domain-containing protein 4A isoform A.	0.477
WNT9B	HNF1B	A0A151N9B7	A0A151N5Z1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Homeobox domain-containing protein.	0.564