38 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAF1	Transcription initiation factor TFIID subunit. (1966 aa)
	BRWD3	Uncharacterized protein. (1554 aa)
	PHIP	PH-interacting protein isoform B. (1788 aa)
	BRD7	Bromodomain-containing protein 7 isoform A. (664 aa)
	BRPF1	Uncharacterized protein. (1677 aa)
	BRD3	Bromodomain-containing protein 3 isoform B. (789 aa)
	TRIM66	Tripartite motif-containing protein 66 isoform A. (1181 aa)
	KAT2B	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (783 aa)
	SMARCA2	Putative global transcription activator SNF2L2. (1430 aa)
	BRDT	Bromodomain testis-specific protein isoform B. (894 aa)
	BRD8	Bromodomain-containing protein 8. (917 aa)
	BAZ2B	Bromodomain adjacent to zinc finger domain protein 2B. (2762 aa)
	BRD8-2	Bromodomain-containing protein 8-like. (373 aa)
	BRD3A	Bromodomain-containing protein 3. (687 aa)
	BRWD1	Uncharacterized protein. (2471 aa)
	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A. (1581 aa)
	CECR2	Cat eye syndrome critical region protein 2. (1469 aa)
	TRIM24-2	Uncharacterized protein. (951 aa)
	CREBBP	CREB-binding protein isoform C. (2208 aa)
	CREBBPA	CREB-binding protein isoform A. (1756 aa)
	PBRM1	Protein polybromo-1 isoform A. (1589 aa)
	BAZ1B	Tyrosine-protein kinase BAZ1B. (1489 aa)
	MAPK13	Mitogen-activated protein kinase. (1546 aa)
	DHX58	Putative ATP-dependent RNA helicase DHX58 isoform E; Belongs to the small heat shock protein (HSP20) family. (1743 aa)
	ZMYND11	Zinc finger MYND domain-containing protein 11 isoform A. (643 aa)
	BRD1	Uncharacterized protein. (734 aa)
	KMT2A	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (3387 aa)
	BRD9	Bromodomain-containing protein 9 isoform B. (673 aa)
	TRIM24	Transcription intermediary factor 1-alpha isoform A. (1074 aa)
	BRD4	Bromodomain-containing protein 4 isoform B. (1369 aa)
	ATAD2B-2	Bromo domain-containing protein. (1418 aa)
	ASH1L	Histone-lysine N-methyltransferase ASH1L isoform A. (1798 aa)
	BPTF	Nucleosome-remodeling factor subunit BPTF. (2737 aa)
	BAZ2A	Bromodomain adjacent to zinc finger domain protein 2A. (1718 aa)
	ATAD2B	ATPase family AAA domain-containing protein 2B. (1982 aa)
	TRIM28	Transcription intermediary factor 1-beta isoform C. (823 aa)
	ZMYND8	Protein kinase C-binding protein 1 isoform A. (1197 aa)
	SMARCA4	Uncharacterized protein. (1610 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASH1L	BPTF	A0A151N706	A0A151N2C6	Histone-lysine N-methyltransferase ASH1L isoform A.	Nucleosome-remodeling factor subunit BPTF.	0.465
ASH1L	BRD1	A0A151N706	A0A151PFC5	Histone-lysine N-methyltransferase ASH1L isoform A.	Uncharacterized protein.	0.421
ASH1L	BRPF1	A0A151N706	A0A151MRL3	Histone-lysine N-methyltransferase ASH1L isoform A.	Uncharacterized protein.	0.421
ASH1L	KMT2A	A0A151N706	A0A151PFN1	Histone-lysine N-methyltransferase ASH1L isoform A.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.487
ASH1L	MAPK13	A0A151N706	A0A151N932	Histone-lysine N-methyltransferase ASH1L isoform A.	Mitogen-activated protein kinase.	0.421
BAZ1A	CECR2	A0A151NKF5	A0A151NIJ3	Bromodomain adjacent to zinc finger domain protein 1A.	Cat eye syndrome critical region protein 2.	0.565
BAZ1B	CECR2	A0A151N9J8	A0A151NIJ3	Tyrosine-protein kinase BAZ1B.	Cat eye syndrome critical region protein 2.	0.443
BAZ1B	CREBBP	A0A151N9J8	A0A151NHH3	Tyrosine-protein kinase BAZ1B.	CREB-binding protein isoform C.	0.545
BAZ1B	CREBBPA	A0A151N9J8	A0A151NHE3	Tyrosine-protein kinase BAZ1B.	CREB-binding protein isoform A.	0.509
BAZ1B	DHX58	A0A151N9J8	A0A151PCM0	Tyrosine-protein kinase BAZ1B.	Putative ATP-dependent RNA helicase DHX58 isoform E; Belongs to the small heat shock protein (HSP20) family.	0.527
BAZ1B	KAT2B	A0A151N9J8	A0A151MQU0	Tyrosine-protein kinase BAZ1B.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.527
BPTF	ASH1L	A0A151N2C6	A0A151N706	Nucleosome-remodeling factor subunit BPTF.	Histone-lysine N-methyltransferase ASH1L isoform A.	0.465
BRD1	ASH1L	A0A151PFC5	A0A151N706	Uncharacterized protein.	Histone-lysine N-methyltransferase ASH1L isoform A.	0.421
BRD1	BRD7	A0A151PFC5	A0A151MRY2	Uncharacterized protein.	Bromodomain-containing protein 7 isoform A.	0.510
BRD1	BRD9	A0A151PFC5	A0A151PH64	Uncharacterized protein.	Bromodomain-containing protein 9 isoform B.	0.627
BRD1	BRPF1	A0A151PFC5	A0A151MRL3	Uncharacterized protein.	Uncharacterized protein.	0.536
BRD1	MAPK13	A0A151PFC5	A0A151N932	Uncharacterized protein.	Mitogen-activated protein kinase.	0.742
BRD3	TAF1	A0A151MRD0	A0A151NTA1	Bromodomain-containing protein 3 isoform B.	Transcription initiation factor TFIID subunit.	0.582
BRD3A	TAF1	A0A151MG60	A0A151NTA1	Bromodomain-containing protein 3.	Transcription initiation factor TFIID subunit.	0.582
BRD4	TAF1	A0A151PHI3	A0A151NTA1	Bromodomain-containing protein 4 isoform B.	Transcription initiation factor TFIID subunit.	0.582