20 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TTF2	Transcription termination factor 2. (1196 aa)
	DHX9	ATP-dependent RNA helicase A. (1546 aa)
	BLM	Bloom syndrome protein. (1213 aa)
	DHX29	ATP-dependent RNA helicase DHX29 isoform B. (1203 aa)
	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit. (795 aa)
	RECQL5	ATP-dependent DNA helicase Q5 isoform B. (1082 aa)
	CHD5	Uncharacterized protein. (1864 aa)
	CHD3-2	Uncharacterized protein. (1966 aa)
	DHX33	Uncharacterized protein. (863 aa)
	DHX40	Putative ATP-dependent RNA helicase DHX40. (806 aa)
	DHX30	Putative ATP-dependent RNA helicase DHX30 isoform A. (1184 aa)
	DHX36	ATP-dependent RNA helicase DHX36. (991 aa)
	DHX35-2	Uncharacterized protein. (712 aa)
	DHX38	Uncharacterized protein. (1102 aa)
	DHX15-2	Uncharacterized protein. (761 aa)
	DHX35	Putative ATP-dependent RNA helicase DHX35. (1194 aa)
	Y1Q_0006834	Uncharacterized protein. (996 aa)
	ERCC6L2	DNA excision repair protein ERCC-6-like 2. (1396 aa)
	CHD3	Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
	CHD1L	Chromodomain-helicase-DNA-binding protein 1-like. (887 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLM	ERCC2	A0A151MTR0	A0A151MYN4	Bloom syndrome protein.	TFIIH basal transcription factor complex helicase XPD subunit.	0.521
BLM	ERCC6L2	A0A151MTR0	A0A151M865	Bloom syndrome protein.	DNA excision repair protein ERCC-6-like 2.	0.441
CHD1L	ERCC2	A0A151MD12	A0A151MYN4	Chromodomain-helicase-DNA-binding protein 1-like.	TFIIH basal transcription factor complex helicase XPD subunit.	0.628
CHD1L	ERCC6L2	A0A151MD12	A0A151M865	Chromodomain-helicase-DNA-binding protein 1-like.	DNA excision repair protein ERCC-6-like 2.	0.442
DHX15-2	DHX33	A0A151PA01	A0A151N5A4	Uncharacterized protein.	Uncharacterized protein.	0.742
DHX15-2	DHX35	A0A151PA01	A0A151PBX6	Uncharacterized protein.	Putative ATP-dependent RNA helicase DHX35.	0.757
DHX15-2	DHX35-2	A0A151PA01	A0A151NZH5	Uncharacterized protein.	Uncharacterized protein.	0.719
DHX15-2	DHX38	A0A151PA01	A0A151P6E9	Uncharacterized protein.	Uncharacterized protein.	0.516
DHX15-2	DHX40	A0A151PA01	A0A151N5X9	Uncharacterized protein.	Putative ATP-dependent RNA helicase DHX40.	0.535
DHX15-2	DHX9	A0A151PA01	A0A151MI83	Uncharacterized protein.	ATP-dependent RNA helicase A.	0.453
DHX29	DHX33	A0A151MX81	A0A151N5A4	ATP-dependent RNA helicase DHX29 isoform B.	Uncharacterized protein.	0.405
DHX29	DHX9	A0A151MX81	A0A151MI83	ATP-dependent RNA helicase DHX29 isoform B.	ATP-dependent RNA helicase A.	0.662
DHX30	DHX9	A0A151N955	A0A151MI83	Putative ATP-dependent RNA helicase DHX30 isoform A.	ATP-dependent RNA helicase A.	0.596
DHX33	DHX15-2	A0A151N5A4	A0A151PA01	Uncharacterized protein.	Uncharacterized protein.	0.742
DHX33	DHX29	A0A151N5A4	A0A151MX81	Uncharacterized protein.	ATP-dependent RNA helicase DHX29 isoform B.	0.405
DHX33	DHX38	A0A151N5A4	A0A151P6E9	Uncharacterized protein.	Uncharacterized protein.	0.798
DHX35	DHX15-2	A0A151PBX6	A0A151PA01	Putative ATP-dependent RNA helicase DHX35.	Uncharacterized protein.	0.757
DHX35	DHX35-2	A0A151PBX6	A0A151NZH5	Putative ATP-dependent RNA helicase DHX35.	Uncharacterized protein.	0.477
DHX35	DHX38	A0A151PBX6	A0A151P6E9	Putative ATP-dependent RNA helicase DHX35.	Uncharacterized protein.	0.860
DHX35	Y1Q_0006834	A0A151PBX6	A0A151M5T3	Putative ATP-dependent RNA helicase DHX35.	Uncharacterized protein.	0.407