20 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHD3-2	Uncharacterized protein. (1966 aa)
	SUV39H1	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (346 aa)
	CHD2	Chromodomain-helicase-DNA-binding protein 2 isoform A. (1799 aa)
	CHD3	Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
	CHD7	Chromodomain-helicase-DNA-binding protein 7 isoform A. (2554 aa)
	CHD1	Uncharacterized protein. (1812 aa)
	MPHOSPH8	M-phase phosphoprotein 8. (790 aa)
	CBX1	Chromobox protein-like protein 1. (214 aa)
	CBX2	Chromobox protein-like protein 2. (350 aa)
	CBX8	Chromobox protein-like protein 8. (366 aa)
	SUV39H2	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily. (407 aa)
	CBX6	Chromobox protein-like protein 6 isoform A. (427 aa)
	CBX7-1	Chromobox protein-like protein 7 isoform B. (252 aa)
	CDYL	Chromodomain Y-like protein isoform B. (585 aa)
	CHD8	Uncharacterized protein. (2136 aa)
	CHD5	Uncharacterized protein. (1864 aa)
	CBX5	Chromobox protein-like protein 5. (234 aa)
	Y1Q_0021242	Uncharacterized protein. (2146 aa)
	CBX3	Chromobox protein-like protein 3. (173 aa)
	Y1Q_0003810	Uncharacterized protein. (2463 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX1	CBX3	A0A151P6H0	A0A151MQK9	Chromobox protein-like protein 1.	Chromobox protein-like protein 3.	0.623
CBX1	CHD3	A0A151P6H0	A0A151MCQ8	Chromobox protein-like protein 1.	Chromodomain-helicase-DNA-binding protein 3.	0.644
CBX1	CHD3-2	A0A151P6H0	A0A151N497	Chromobox protein-like protein 1.	Uncharacterized protein.	0.558
CBX1	CHD5	A0A151P6H0	A0A151N3K5	Chromobox protein-like protein 1.	Uncharacterized protein.	0.558
CBX1	SUV39H1	A0A151P6H0	A0A151M491	Chromobox protein-like protein 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.730
CBX1	SUV39H2	A0A151P6H0	A0A151NPM6	Chromobox protein-like protein 1.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.730
CBX2	CBX6	A0A151NRL3	A0A151NHM3	Chromobox protein-like protein 2.	Chromobox protein-like protein 6 isoform A.	0.621
CBX2	CBX7-1	A0A151NRL3	A0A151NHL9	Chromobox protein-like protein 2.	Chromobox protein-like protein 7 isoform B.	0.703
CBX2	CBX8	A0A151NRL3	A0A151NR84	Chromobox protein-like protein 2.	Chromobox protein-like protein 8.	0.847
CBX3	CBX1	A0A151MQK9	A0A151P6H0	Chromobox protein-like protein 3.	Chromobox protein-like protein 1.	0.623
CBX3	CBX5	A0A151MQK9	A0A151MUN3	Chromobox protein-like protein 3.	Chromobox protein-like protein 5.	0.625
CBX3	CHD3	A0A151MQK9	A0A151MCQ8	Chromobox protein-like protein 3.	Chromodomain-helicase-DNA-binding protein 3.	0.575
CBX3	CHD3-2	A0A151MQK9	A0A151N497	Chromobox protein-like protein 3.	Uncharacterized protein.	0.575
CBX3	CHD5	A0A151MQK9	A0A151N3K5	Chromobox protein-like protein 3.	Uncharacterized protein.	0.575
CBX3	SUV39H1	A0A151MQK9	A0A151M491	Chromobox protein-like protein 3.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.752
CBX3	SUV39H2	A0A151MQK9	A0A151NPM6	Chromobox protein-like protein 3.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.752
CBX5	CBX3	A0A151MUN3	A0A151MQK9	Chromobox protein-like protein 5.	Chromobox protein-like protein 3.	0.625
CBX5	CHD3	A0A151MUN3	A0A151MCQ8	Chromobox protein-like protein 5.	Chromodomain-helicase-DNA-binding protein 3.	0.558
CBX5	CHD3-2	A0A151MUN3	A0A151N497	Chromobox protein-like protein 5.	Uncharacterized protein.	0.558
CBX5	CHD5	A0A151MUN3	A0A151N3K5	Chromobox protein-like protein 5.	Uncharacterized protein.	0.558