(10 nodes) GOLD domain superfamily network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMED7	Transmembrane emp24 domain-containing protein 7. (223 aa)
	SEC14L2	SEC14-like protein 2. (409 aa)
	SEC14L1	SEC14-like protein 1. (748 aa)
	TMED8	Protein TMED8 isoform A. (365 aa)
	TMED5	Transmembrane emp24 domain-containing protein 5. (178 aa)
	TMED2	Transmembrane emp24 domain-containing protein 2 isoform B. (201 aa)
	TMED1	Transmembrane emp24 domain-containing protein 1. (182 aa)
	FYCO1	FYVE and coiled-coil domain-containing protein 1. (1545 aa)
	ACBD3	Golgi resident protein GCP60. (502 aa)
	SEC14L5	Uncharacterized protein. (755 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TMED1	TMED2	A0A151NUH7	A0A151NRY5	Transmembrane emp24 domain-containing protein 1.	Transmembrane emp24 domain-containing protein 2 isoform B.	0.538
TMED2	TMED1	A0A151NRY5	A0A151NUH7	Transmembrane emp24 domain-containing protein 2 isoform B.	Transmembrane emp24 domain-containing protein 1.	0.538
TMED2	TMED5	A0A151NRY5	A0A151M4Z6	Transmembrane emp24 domain-containing protein 2 isoform B.	Transmembrane emp24 domain-containing protein 5.	0.538
TMED2	TMED7	A0A151NRY5	A0A151PIG3	Transmembrane emp24 domain-containing protein 2 isoform B.	Transmembrane emp24 domain-containing protein 7.	0.905
TMED5	TMED2	A0A151M4Z6	A0A151NRY5	Transmembrane emp24 domain-containing protein 5.	Transmembrane emp24 domain-containing protein 2 isoform B.	0.538
TMED7	TMED2	A0A151PIG3	A0A151NRY5	Transmembrane emp24 domain-containing protein 7.	Transmembrane emp24 domain-containing protein 2 isoform B.	0.905