48 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NUP205	Nuclear pore complex protein Nup205. (2014 aa)
	NUP35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
	NUP98	Nuclear pore complex protein Nup98-Nup96 isoform A. (1816 aa)
	NUP133	Nuclear pore complex protein Nup133. (1154 aa)
	NDC1	Nucleoporin NDC1. (644 aa)
	CPSF1-2	Amelogenin-like. (1015 aa)
	NUP188	Nucleoporin NUP188-like protein isoform A. (1740 aa)
	NUP214	Nuclear pore complex protein Nup214 isoform A. (1560 aa)
	CUNH20orf196	Uncharacterized protein. (227 aa)
	TPR	Nucleoprotein TPR isoform A. (2325 aa)
	SEC13	SEC13-like protein; Belongs to the WD repeat SEC13 family. (320 aa)
	SYMPK	Symplekin. (702 aa)
	SYMPKL	Symplekin. (501 aa)
	NUP160	Nuclear pore complex protein Nup160. (1373 aa)
	NUP54	Nucleoporin p54. (502 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (851 aa)
	NUP58	Nucleoporin p58/p45. (601 aa)
	NUP155	Nuclear pore complex protein Nup155. (1383 aa)
	NUP210	BIG2 domain-containing protein. (1931 aa)
	NUP153-1	Nuclear pore complex protein Nup153 isoform B. (1292 aa)
	CPSF4-1	Cleavage and polyadenylation specificity factor subunit 4 isoform B. (212 aa)
	CPSF4L	Putative cleavage and polyadenylation specificity factor subunit 4-like protein. (261 aa)
	NUP85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (620 aa)
	NUP88	Nuclear pore complex protein Nup88. (612 aa)
	NCBP2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	CPSF3	Cleavage and polyadenylation specificity factor subunit 3. (691 aa)
	Y1Q_0006765	Uncharacterized protein. (135 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (794 aa)
	SEH1L	Nucleoporin SEH1; Belongs to the WD repeat SEC13 family. (360 aa)
	NUP37	Nucleoporin Nup37. (341 aa)
	NUP43	Nucleoporin Nup43. (379 aa)
	EIF4E	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
	CPSF1	Cleavage and polyadenylation specificity factor subunit 1. (360 aa)
	NUP62CL	Nucleoporin-62 C-terminal-like protein. (584 aa)
	ALYREF	THO complex subunit 4. (216 aa)
	POM121	Nuclear envelope pore membrane protein POM 121C. (522 aa)
	WDR33	Pre-mRNA 3' end processing protein WDR33. (1096 aa)
	RANBP2	E3 SUMO-protein ligase RanBP2. (2133 aa)
	EIF4E1B	Eukaryotic translation initiation factor 4E type 1B; Belongs to the eukaryotic initiation factor 4E family. (218 aa)
	Y1Q_0002699	Spem1 domain-containing protein. (469 aa)
	RAE1	mRNA export factor. (368 aa)
	AAAS	Aladin isoform B. (525 aa)
	NUP50	Nuclear pore complex protein Nup50. (520 aa)
	CPSF2	Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
	FIP1L1	Pre-mRNA 3'-end-processing factor FIP1. (612 aa)
	NUP107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (859 aa)
	NUP210L	Nuclear pore membrane glycoprotein 210-like isoform A. (1375 aa)
	NUP210L-2	Uncharacterized protein. (218 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAAS	ALYREF	A0A151P4Y1	A0A151NRE9	Aladin isoform B.	THO complex subunit 4.	0.609
AAAS	CPSF2	A0A151P4Y1	A0A151P9B6	Aladin isoform B.	Cleavage and polyadenylation specificity factor subunit 2.	0.449
AAAS	CPSF3	A0A151P4Y1	A0A151N890	Aladin isoform B.	Cleavage and polyadenylation specificity factor subunit 3.	0.474
AAAS	NDC1	A0A151P4Y1	A0A151M4J0	Aladin isoform B.	Nucleoporin NDC1.	0.957
AAAS	NUP107	A0A151P4Y1	A0A151PF52	Aladin isoform B.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.966
AAAS	NUP133	A0A151P4Y1	A0A151M2P4	Aladin isoform B.	Nuclear pore complex protein Nup133.	0.888
AAAS	NUP153-1	A0A151P4Y1	A0A151N137	Aladin isoform B.	Nuclear pore complex protein Nup153 isoform B.	0.894
AAAS	NUP155	A0A151P4Y1	A0A151MWY6	Aladin isoform B.	Nuclear pore complex protein Nup155.	0.969
AAAS	NUP160	A0A151P4Y1	A0A151MMX1	Aladin isoform B.	Nuclear pore complex protein Nup160.	0.913
AAAS	NUP188	A0A151P4Y1	A0A151MFG1	Aladin isoform B.	Nucleoporin NUP188-like protein isoform A.	0.960
AAAS	NUP205	A0A151P4Y1	A0A151LZ45	Aladin isoform B.	Nuclear pore complex protein Nup205.	0.960
AAAS	NUP210	A0A151P4Y1	A0A151MZB1	Aladin isoform B.	BIG2 domain-containing protein.	0.758
AAAS	NUP210L	A0A151P4Y1	A0A151PIV0	Aladin isoform B.	Nuclear pore membrane glycoprotein 210-like isoform A.	0.758
AAAS	NUP210L-2	A0A151P4Y1	A0A151PJ35	Aladin isoform B.	Uncharacterized protein.	0.758
AAAS	NUP214	A0A151P4Y1	A0A151MFL4	Aladin isoform B.	Nuclear pore complex protein Nup214 isoform A.	0.921
AAAS	NUP35	A0A151P4Y1	A0A151LZS7	Aladin isoform B.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.935
AAAS	NUP37	A0A151P4Y1	A0A151NI22	Aladin isoform B.	Nucleoporin Nup37.	0.870
AAAS	NUP43	A0A151P4Y1	A0A151NLN5	Aladin isoform B.	Nucleoporin Nup43.	0.898
AAAS	NUP50	A0A151P4Y1	A0A151P6U8	Aladin isoform B.	Nuclear pore complex protein Nup50.	0.864
AAAS	NUP54	A0A151P4Y1	A0A151MNC4	Aladin isoform B.	Nucleoporin p54.	0.959