STRINGSTRING
EIF4E EIF4E SLBPL SLBPL TPR TPR SEC13 SEC13 NUP54 NUP54 NUP93 NUP93 NUP58 NUP58 NUP155 NUP155 NUP210 NUP210 RANBP2 RANBP2 WDR33 WDR33 POM121 POM121 ALYREF ALYREF NUP62CL NUP62CL CPSF1 CPSF1 CUNH20orf196 CUNH20orf196 NUP43 NUP43 NUP37 NUP37 SEH1L SEH1L NCBP1 NCBP1 Y1Q_0006765 Y1Q_0006765 CPSF3 CPSF3 NCBP2 NCBP2 NUP88 NUP88 NUP133 NUP133 NUP98 NUP98 NUP35 NUP35 NUP205 NUP205 NUP85 NUP85 CPSF4L CPSF4L CPSF4-1 CPSF4-1 NUP153-1 NUP153-1 EIF4E1B EIF4E1B Y1Q_0002699 Y1Q_0002699 RAE1 RAE1 Y1Q_0013532 Y1Q_0013532 AAAS AAAS NUP50 NUP50 CPSF2 CPSF2 Y1Q_0021324 Y1Q_0021324 SLBP SLBP FIP1L1 FIP1L1 NUP107 NUP107 NUP210L NUP210L NUP210L-2 NUP210L-2 NDC1 NDC1 CPSF1-2 CPSF1-2 NUP188 NUP188 NUP214 NUP214 SYMPK SYMPK SYMPKL SYMPKL NUP160 NUP160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EIF4EEukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (217 aa)
SLBPLHistone RNA hairpin-binding protein. (245 aa)
TPRNucleoprotein TPR isoform A. (2325 aa)
SEC13SEC13-like protein; Belongs to the WD repeat SEC13 family. (320 aa)
NUP54Nucleoporin p54. (502 aa)
NUP93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (851 aa)
NUP58Nucleoporin p58/p45. (601 aa)
NUP155Nuclear pore complex protein Nup155. (1383 aa)
NUP210BIG2 domain-containing protein. (1931 aa)
RANBP2E3 SUMO-protein ligase RanBP2. (2133 aa)
WDR33Pre-mRNA 3' end processing protein WDR33. (1096 aa)
POM121Nuclear envelope pore membrane protein POM 121C. (522 aa)
ALYREFTHO complex subunit 4. (216 aa)
NUP62CLNucleoporin-62 C-terminal-like protein. (584 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (360 aa)
CUNH20orf196Uncharacterized protein. (227 aa)
NUP43Nucleoporin Nup43. (379 aa)
NUP37Nucleoporin Nup37. (341 aa)
SEH1LNucleoporin SEH1; Belongs to the WD repeat SEC13 family. (360 aa)
NCBP1Nuclear cap-binding protein subunit 1. (794 aa)
Y1Q_0006765Uncharacterized protein. (135 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3. (691 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
NUP88Nuclear pore complex protein Nup88. (612 aa)
NUP133Nuclear pore complex protein Nup133. (1154 aa)
NUP98Nuclear pore complex protein Nup98-Nup96 isoform A. (1816 aa)
NUP35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (325 aa)
NUP205Nuclear pore complex protein Nup205. (2014 aa)
NUP85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (620 aa)
CPSF4LPutative cleavage and polyadenylation specificity factor subunit 4-like protein. (261 aa)
CPSF4-1Cleavage and polyadenylation specificity factor subunit 4 isoform B. (212 aa)
NUP153-1Nuclear pore complex protein Nup153 isoform B. (1292 aa)
EIF4E1BEukaryotic translation initiation factor 4E type 1B; Belongs to the eukaryotic initiation factor 4E family. (218 aa)
Y1Q_0002699Spem1 domain-containing protein. (469 aa)
RAE1mRNA export factor. (368 aa)
Y1Q_0013532Ankyrin repeat domain-containing protein 9-like. (296 aa)
AAASAladin isoform B. (525 aa)
NUP50Nuclear pore complex protein Nup50. (520 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
Y1Q_0021324SLBP_RNA_bind domain-containing protein. (423 aa)
SLBPHistone RNA hairpin-binding protein. (268 aa)
FIP1L1Pre-mRNA 3'-end-processing factor FIP1. (612 aa)
NUP107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (859 aa)
NUP210LNuclear pore membrane glycoprotein 210-like isoform A. (1375 aa)
NUP210L-2Uncharacterized protein. (218 aa)
NDC1Nucleoporin NDC1. (644 aa)
CPSF1-2Amelogenin-like. (1015 aa)
NUP188Nucleoporin NUP188-like protein isoform A. (1740 aa)
NUP214Nuclear pore complex protein Nup214 isoform A. (1560 aa)
SYMPKSymplekin. (702 aa)
SYMPKLSymplekin. (501 aa)
NUP160Nuclear pore complex protein Nup160. (1373 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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