9 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCDC71L-1	Coiled-coil domain-containing protein 71L isoform B. (79 aa)
	SQSTM1	Sequestosome-1. (457 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	IKBKB-2	Uncharacterized protein. (757 aa)
	NFKBIA	NF-kappa-B inhibitor alpha. (299 aa)
	KXD1	KxDL motif-containing protein 1. (293 aa)
	NGFR	Tumor necrosis factor receptor superfamily member 16. (427 aa)
	NGF	Beta-nerve growth factor; Belongs to the NGF-beta family. (329 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IKBKB-2	KXD1	A0A151ND20	A0A151NUA6	Uncharacterized protein.	KxDL motif-containing protein 1.	0.669
IKBKB-2	NFKBIA	A0A151ND20	A0A151NKE7	Uncharacterized protein.	NF-kappa-B inhibitor alpha.	0.999
IKBKB-2	RPS27A	A0A151ND20	A0A151MGG2	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.629
IKBKB-2	SQSTM1	A0A151ND20	A0A151M7D3	Uncharacterized protein.	Sequestosome-1.	0.640
IKBKB-2	TRAF6	A0A151ND20	A0A151MBD1	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.905
KXD1	IKBKB-2	A0A151NUA6	A0A151ND20	KxDL motif-containing protein 1.	Uncharacterized protein.	0.669
KXD1	NFKBIA	A0A151NUA6	A0A151NKE7	KxDL motif-containing protein 1.	NF-kappa-B inhibitor alpha.	0.902
KXD1	RPS27A	A0A151NUA6	A0A151MGG2	KxDL motif-containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.999
KXD1	SQSTM1	A0A151NUA6	A0A151M7D3	KxDL motif-containing protein 1.	Sequestosome-1.	0.771
KXD1	TRAF6	A0A151NUA6	A0A151MBD1	KxDL motif-containing protein 1.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.931
NFKBIA	IKBKB-2	A0A151NKE7	A0A151ND20	NF-kappa-B inhibitor alpha.	Uncharacterized protein.	0.999
NFKBIA	KXD1	A0A151NKE7	A0A151NUA6	NF-kappa-B inhibitor alpha.	KxDL motif-containing protein 1.	0.902
NFKBIA	RPS27A	A0A151NKE7	A0A151MGG2	NF-kappa-B inhibitor alpha.	Ubiquitin-40S ribosomal protein S27a.	0.935
NFKBIA	SQSTM1	A0A151NKE7	A0A151M7D3	NF-kappa-B inhibitor alpha.	Sequestosome-1.	0.653
NFKBIA	TRAF6	A0A151NKE7	A0A151MBD1	NF-kappa-B inhibitor alpha.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.824
NGF	NGFR	A0A151PH10	A0A151P5P1	Beta-nerve growth factor; Belongs to the NGF-beta family.	Tumor necrosis factor receptor superfamily member 16.	0.954
NGFR	NGF	A0A151P5P1	A0A151PH10	Tumor necrosis factor receptor superfamily member 16.	Beta-nerve growth factor; Belongs to the NGF-beta family.	0.954
RPS27A	IKBKB-2	A0A151MGG2	A0A151ND20	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.629
RPS27A	KXD1	A0A151MGG2	A0A151NUA6	Ubiquitin-40S ribosomal protein S27a.	KxDL motif-containing protein 1.	0.999
RPS27A	NFKBIA	A0A151MGG2	A0A151NKE7	Ubiquitin-40S ribosomal protein S27a.	NF-kappa-B inhibitor alpha.	0.935