17 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NCOR1	Nuclear receptor corepressor 1 isoform B. (2411 aa)
	SMAD4	Mothers against decapentaplegic homolog. (559 aa)
	PARP1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
	TGIF2	Homeobox protein TGIF2. (295 aa)
	KXD1	KxDL motif-containing protein 1. (293 aa)
	Y1Q_0018673	Uncharacterized protein. (2454 aa)
	USP9X	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2552 aa)
	ATP1B4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (321 aa)
	TGIF1	Homeobox protein TGIF1. (268 aa)
	SKI	Ski oncogene isoform A. (637 aa)
	SMURF2	E3 ubiquitin-protein ligase. (786 aa)
	SMAD2-2	Mothers against decapentaplegic homolog. (512 aa)
	SNW1	SNW domain-containing protein 1. (536 aa)
	SMAD3	Mothers against decapentaplegic homolog. (426 aa)
	SKIL	Ski-like protein. (336 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	Y1Q_0009747	Mothers against decapentaplegic homolog. (517 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP1B4	SNW1	A0A151NN76	A0A151M5I2	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	SNW domain-containing protein 1.	0.753
KXD1	NCOR1	A0A151NUA6	A0A151NBD5	KxDL motif-containing protein 1.	Nuclear receptor corepressor 1 isoform B.	0.572
KXD1	RPS27A	A0A151NUA6	A0A151MGG2	KxDL motif-containing protein 1.	Ubiquitin-40S ribosomal protein S27a.	0.999
KXD1	SMAD2-2	A0A151NUA6	A0A151MWR4	KxDL motif-containing protein 1.	Mothers against decapentaplegic homolog.	0.441
KXD1	SMAD3	A0A151NUA6	A0A151M8V6	KxDL motif-containing protein 1.	Mothers against decapentaplegic homolog.	0.441
KXD1	SMURF2	A0A151NUA6	A0A151N2Z0	KxDL motif-containing protein 1.	E3 ubiquitin-protein ligase.	0.908
KXD1	USP9X	A0A151NUA6	A0A151NQR3	KxDL motif-containing protein 1.	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family.	0.597
KXD1	Y1Q_0018673	A0A151NUA6	A0A151NRX5	KxDL motif-containing protein 1.	Uncharacterized protein.	0.572
NCOR1	KXD1	A0A151NBD5	A0A151NUA6	Nuclear receptor corepressor 1 isoform B.	KxDL motif-containing protein 1.	0.572
NCOR1	RPS27A	A0A151NBD5	A0A151MGG2	Nuclear receptor corepressor 1 isoform B.	Ubiquitin-40S ribosomal protein S27a.	0.517
NCOR1	SKI	A0A151NBD5	A0A151N3N3	Nuclear receptor corepressor 1 isoform B.	Ski oncogene isoform A.	0.687
NCOR1	SKIL	A0A151NBD5	A0A151MGE9	Nuclear receptor corepressor 1 isoform B.	Ski-like protein.	0.672
NCOR1	SMAD2-2	A0A151NBD5	A0A151MWR4	Nuclear receptor corepressor 1 isoform B.	Mothers against decapentaplegic homolog.	0.442
NCOR1	SMAD3	A0A151NBD5	A0A151M8V6	Nuclear receptor corepressor 1 isoform B.	Mothers against decapentaplegic homolog.	0.442
NCOR1	SMAD4	A0A151NBD5	A0A151PJG8	Nuclear receptor corepressor 1 isoform B.	Mothers against decapentaplegic homolog.	0.499
NCOR1	SNW1	A0A151NBD5	A0A151M5I2	Nuclear receptor corepressor 1 isoform B.	SNW domain-containing protein 1.	0.708
NCOR1	Y1Q_0009747	A0A151NBD5	A0A151MWM4	Nuclear receptor corepressor 1 isoform B.	Mothers against decapentaplegic homolog.	0.499
PARP1	RPS27A	A0A151P373	A0A151MGG2	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Ubiquitin-40S ribosomal protein S27a.	0.635
PARP1	SMAD2-2	A0A151P373	A0A151MWR4	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Mothers against decapentaplegic homolog.	0.618
PARP1	SMAD3	A0A151P373	A0A151M8V6	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	Mothers against decapentaplegic homolog.	0.618