39 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MBD1-1	Methyl-CpG-binding domain protein 1 isoform B. (705 aa)
	TOPORS	E3 ubiquitin-protein ligase Topors isoform B. (493 aa)
	PIAS2	Uncharacterized protein. (655 aa)
	ZNF131	Zinc finger protein 131 isoform B. (619 aa)
	PHC2L	Polyhomeotic-like protein 2 isoform B. (525 aa)
	SCML2	SAM domain-containing protein. (805 aa)
	KCTD2	BTB/POZ domain-containing protein KCTD2. (159 aa)
	DAXX	Death domain-associated protein 6 isoform A. (758 aa)
	RING1	E3 ubiquitin-protein ligase RING1. (327 aa)
	NPM2	Nucleoplasmin-2. (210 aa)
	SUMO1	Small ubiquitin-related modifier. (93 aa)
	NFATC2IP	NFATC2-interacting protein. (352 aa)
	UHRF1	E3 ubiquitin-protein ligase UHRF1 isoform A. (818 aa)
	PIAS1	E3 SUMO-protein ligase PIAS1. (651 aa)
	VTCN1	V-set domain-containing T-cell activation inhibitor 1. (289 aa)
	RNF2	E3 ubiquitin-protein ligase RING2 isoform B. (404 aa)
	ZMIZ1	Zinc finger MIZ domain-containing protein 1 isoform B. (881 aa)
	ZMIZ1-2	SP-RING-type domain-containing protein. (1009 aa)
	CASP8AP2	CASP8-associated protein 2. (1424 aa)
	CFAP53	Cilia-and flagella-associated protein 53. (513 aa)
	PHC2	Polyhomeotic-like protein 2 isoform A. (324 aa)
	SCMH1	Polycomb protein SCMH1 isoform A. (709 aa)
	BMI1	Polycomb complex protein BMI-1. (310 aa)
	ING2	Inhibitor of growth protein. (228 aa)
	PPARGC1A	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform A. (555 aa)
	PHC1	Polyhomeotic-like protein 1 isoform A. (688 aa)
	PCGF2	Polycomb group RING finger protein 2 isoform B. (332 aa)
	SAFB2	Scaffold attachment factor B1 isoform A. (777 aa)
	SAFB	Scaffold attachment factor B1. (889 aa)
	UHRF1-2	Uncharacterized protein. (805 aa)
	PIAS3	Uncharacterized protein. (641 aa)
	ING1	Inhibitor of growth protein. (281 aa)
	E4F1	Transcription factor E4F1. (719 aa)
	CBX2	Chromobox protein-like protein 2. (350 aa)
	NPM1	Nucleophosmin. (255 aa)
	CBX4	E3 SUMO-protein ligase CBX4. (456 aa)
	CBX8	Chromobox protein-like protein 8. (366 aa)
	DDX17-2	Uncharacterized protein; Belongs to the DEAD box helicase family. (658 aa)
	SUMO3	Small ubiquitin-related modifier. (94 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMI1	CBX2	A0A151PCQ6	A0A151NRL3	Polycomb complex protein BMI-1.	Chromobox protein-like protein 2.	0.894
BMI1	CBX4	A0A151PCQ6	A0A151NR94	Polycomb complex protein BMI-1.	E3 SUMO-protein ligase CBX4.	0.868
BMI1	CBX8	A0A151PCQ6	A0A151NR84	Polycomb complex protein BMI-1.	Chromobox protein-like protein 8.	0.935
BMI1	KCTD2	A0A151PCQ6	A0A151N3I1	Polycomb complex protein BMI-1.	BTB/POZ domain-containing protein KCTD2.	0.540
BMI1	PHC1	A0A151PCQ6	A0A151P6I7	Polycomb complex protein BMI-1.	Polyhomeotic-like protein 1 isoform A.	0.667
BMI1	PHC2	A0A151PCQ6	A0A151PJC5	Polycomb complex protein BMI-1.	Polyhomeotic-like protein 2 isoform A.	0.667
BMI1	PHC2L	A0A151PCQ6	A0A151MZX4	Polycomb complex protein BMI-1.	Polyhomeotic-like protein 2 isoform B.	0.667
BMI1	RING1	A0A151PCQ6	A0A151N7T0	Polycomb complex protein BMI-1.	E3 ubiquitin-protein ligase RING1.	0.944
BMI1	RNF2	A0A151PCQ6	A0A151MI80	Polycomb complex protein BMI-1.	E3 ubiquitin-protein ligase RING2 isoform B.	0.899
BMI1	SCMH1	A0A151PCQ6	A0A151PGR5	Polycomb complex protein BMI-1.	Polycomb protein SCMH1 isoform A.	0.829
BMI1	SCML2	A0A151PCQ6	A0A151N0E6	Polycomb complex protein BMI-1.	SAM domain-containing protein.	0.829
BMI1	SUMO3	A0A151PCQ6	A0A151NGU2	Polycomb complex protein BMI-1.	Small ubiquitin-related modifier.	0.464
CASP8AP2	CBX4	A0A151MTT4	A0A151NR94	CASP8-associated protein 2.	E3 SUMO-protein ligase CBX4.	0.438
CASP8AP2	CBX8	A0A151MTT4	A0A151NR84	CASP8-associated protein 2.	Chromobox protein-like protein 8.	0.438
CASP8AP2	KCTD2	A0A151MTT4	A0A151N3I1	CASP8-associated protein 2.	BTB/POZ domain-containing protein KCTD2.	0.503
CASP8AP2	SUMO1	A0A151MTT4	A0A151N988	CASP8-associated protein 2.	Small ubiquitin-related modifier.	0.464
CBX2	BMI1	A0A151NRL3	A0A151PCQ6	Chromobox protein-like protein 2.	Polycomb complex protein BMI-1.	0.894
CBX2	CBX4	A0A151NRL3	A0A151NR94	Chromobox protein-like protein 2.	E3 SUMO-protein ligase CBX4.	0.860
CBX2	CBX8	A0A151NRL3	A0A151NR84	Chromobox protein-like protein 2.	Chromobox protein-like protein 8.	0.847
CBX2	KCTD2	A0A151NRL3	A0A151N3I1	Chromobox protein-like protein 2.	BTB/POZ domain-containing protein KCTD2.	0.489