22 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIPA1L3	Signal-induced proliferation-associated 1-like protein 3. (1017 aa)
	RAPGEF5	Rap guanine nucleotide exchange factor 5. (873 aa)
	Y1Q_0011506	Rap guanine nucleotide exchange factor 4-like. (169 aa)
	RAPGEF3	Uncharacterized protein. (874 aa)
	SIPA1L1	Uncharacterized protein. (1780 aa)
	RAPGEF5A	Rap guanine nucleotide exchange factor 5 isoform A. (865 aa)
	RAP1GAP-2	Rap-GAP domain-containing protein. (756 aa)
	RASGRP1-2	Uncharacterized protein. (744 aa)
	YWHAZ	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (319 aa)
	RAP1GAP2	Rap-GAP domain-containing protein. (866 aa)
	Y1Q_0016124	Signal-induced proliferation-associated protein 1-like. (179 aa)
	THAP1	THAP domain-containing protein 1. (169 aa)
	PRKACB	cAMP-dependent protein kinase catalytic subunit beta isoform C; Belongs to the protein kinase superfamily. (368 aa)
	Y1Q_0006499	Uncharacterized protein; Belongs to the protein kinase superfamily. (401 aa)
	THAP7-1	THAP domain-containing protein 8 isoform A. (758 aa)
	RASGRP2-1	RAS guanyl-releasing protein 2 isoform A. (520 aa)
	Y1Q_0017432	Signal-induced proliferation-associated protein 1. (251 aa)
	Y1Q_0014741	Rap-GAP domain-containing protein. (532 aa)
	YWHAB	14-3-3 protein beta/alpha; Belongs to the 14-3-3 family. (300 aa)
	RAP1GAP	Rap1 GTPase-activating protein 1 isoform B. (718 aa)
	RAPGEFL1	Rap guanine nucleotide exchange factor-like 1. (562 aa)
	RAP1B	Ras-related protein Rap-1b. (245 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRKACB	RAP1B	A0A151NJ28	A0A151PF72	cAMP-dependent protein kinase catalytic subunit beta isoform C; Belongs to the protein kinase superfamily.	Ras-related protein Rap-1b.	0.922
PRKACB	Y1Q_0006499	A0A151NJ28	A0A151NKT3	cAMP-dependent protein kinase catalytic subunit beta isoform C; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
RAP1B	PRKACB	A0A151PF72	A0A151NJ28	Ras-related protein Rap-1b.	cAMP-dependent protein kinase catalytic subunit beta isoform C; Belongs to the protein kinase superfamily.	0.922
RAP1B	RAP1GAP	A0A151PF72	A0A151PBT1	Ras-related protein Rap-1b.	Rap1 GTPase-activating protein 1 isoform B.	0.837
RAP1B	RAP1GAP-2	A0A151PF72	A0A151MTS4	Ras-related protein Rap-1b.	Rap-GAP domain-containing protein.	0.837
RAP1B	RAP1GAP2	A0A151PF72	A0A151N6D1	Ras-related protein Rap-1b.	Rap-GAP domain-containing protein.	0.837
RAP1B	RAPGEF3	A0A151PF72	A0A151M663	Ras-related protein Rap-1b.	Uncharacterized protein.	0.769
RAP1B	RAPGEF5	A0A151PF72	A0A151M006	Ras-related protein Rap-1b.	Rap guanine nucleotide exchange factor 5.	0.883
RAP1B	RAPGEF5A	A0A151PF72	A0A151MQH6	Ras-related protein Rap-1b.	Rap guanine nucleotide exchange factor 5 isoform A.	0.449
RAP1B	RASGRP1-2	A0A151PF72	A0A151MUW9	Ras-related protein Rap-1b.	Uncharacterized protein.	0.823
RAP1B	RASGRP2-1	A0A151PF72	A0A151NQ62	Ras-related protein Rap-1b.	RAS guanyl-releasing protein 2 isoform A.	0.916
RAP1B	SIPA1L1	A0A151PF72	A0A151MAW0	Ras-related protein Rap-1b.	Uncharacterized protein.	0.518
RAP1B	SIPA1L3	A0A151PF72	A0A151N7B8	Ras-related protein Rap-1b.	Signal-induced proliferation-associated 1-like protein 3.	0.518
RAP1B	Y1Q_0006499	A0A151PF72	A0A151NKT3	Ras-related protein Rap-1b.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.922
RAP1B	Y1Q_0011506	A0A151PF72	A0A151M009	Ras-related protein Rap-1b.	Rap guanine nucleotide exchange factor 4-like.	0.883
RAP1B	Y1Q_0014741	A0A151PF72	A0A151NUQ6	Ras-related protein Rap-1b.	Rap-GAP domain-containing protein.	0.518
RAP1B	Y1Q_0016124	A0A151PF72	A0A151N8J4	Ras-related protein Rap-1b.	Signal-induced proliferation-associated protein 1-like.	0.518
RAP1B	Y1Q_0017432	A0A151PF72	A0A151NTL7	Ras-related protein Rap-1b.	Signal-induced proliferation-associated protein 1.	0.518
RAP1B	YWHAB	A0A151PF72	A0A151NZU7	Ras-related protein Rap-1b.	14-3-3 protein beta/alpha; Belongs to the 14-3-3 family.	0.678
RAP1B	YWHAZ	A0A151PF72	A0A151MXZ7	Ras-related protein Rap-1b.	14-3-3 protein zeta/delta; Belongs to the 14-3-3 family.	0.681