STRINGSTRING
EXOSC8 EXOSC8 EXOSC5 EXOSC5 PARN PARN PSMD12 PSMD12 Y1Q_0018846 Y1Q_0018846 HSPB1 HSPB1 TNPO2 TNPO2 PSMA5 PSMA5 PSMC5 PSMC5 XRN1 XRN1 ELAVL1 ELAVL1 ELAVL2 ELAVL2 PSMC4 PSMC4 FUBP1 FUBP1 PSMA6 PSMA6 DIS3 DIS3 PSME2 PSME2 PSME1 PSME1 PSMD10 PSMD10 PSMD7 PSMD7 EXOSC4 EXOSC4 PSMC2 PSMC2 PSMB11 PSMB11 PSMB5 PSMB5 PSMD9-1 PSMD9-1 SCARB1 SCARB1 PSMB6 PSMB6 KHSRP KHSRP ANP32B ANP32B PSMD13 PSMD13 PABPC1L PABPC1L PSMA7 PSMA7 YWHAB YWHAB HNRNPD HNRNPD PSMF1 PSMF1 ZFP36L2 ZFP36L2 ELAVL3 ELAVL3 PSMD3 PSMD3 PSMB3 PSMB3 PSMC1 PSMC1 PSMD11 PSMD11 PSMC6 PSMC6 EXOSC9 EXOSC9 PSMB2 PSMB2 TOE1 TOE1 TNPO1 TNPO1 DCP2 DCP2 PSMD8 PSMD8 PABPC1 PABPC1 PSMB9 PSMB9 PSMB8 PSMB8 DIS3L2 DIS3L2 PSMD6 PSMD6 CUNH20orf196 CUNH20orf196 XPO1 XPO1 RPS27A RPS27A PSME4 PSME4 PSMB7 PSMB7 PSMD5-1 PSMD5-1 NUP214 NUP214 FUBP3 FUBP3 EXOSC2 EXOSC2 SET SET PSMA1 PSMA1 PSMC3 PSMC3 ZFP36L1 ZFP36L1 MAPKAPK3 MAPKAPK3 HYKK HYKK DIS3L DIS3L ANP32A ANP32A HNRNPAB-1 HNRNPAB-1 PSMD4 PSMD4 PSMB4 PSMB4 ELAVL4 ELAVL4 PNLDC1 PNLDC1 PSMA3 PSMA3 PSMD14 PSMD14 Y1Q_0022938 Y1Q_0022938 Y1Q_0005128 Y1Q_0005128 PSMD1 PSMD1 DCP1A DCP1A YWHAZ YWHAZ EXOSC1 EXOSC1 EXOSC3 EXOSC3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EXOSC8Exosome complex component RRP43. (269 aa)
EXOSC5Exosome complex component RRP46. (200 aa)
PARNPoly(A)-specific ribonuclease PARN. (638 aa)
PSMD1226S proteasome non-ATPase regulatory subunit 12. (441 aa)
Y1Q_0018846Uncharacterized protein. (422 aa)
HSPB1Heat shock protein beta-1; Belongs to the small heat shock protein (HSP20) family. (217 aa)
TNPO2Transportin-2. (996 aa)
PSMA5Proteasome subunit alpha type. (241 aa)
PSMC5Proteasome (Prosome, macropain) 26S subunit, ATPase, 5; Belongs to the AAA ATPase family. (411 aa)
XRN15'-3' exoribonuclease 1. (1728 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (334 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (388 aa)
PSMC426S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (418 aa)
FUBP1Far upstream element-binding protein 1 isoform A. (663 aa)
PSMA6Proteasome subunit alpha type. (252 aa)
DIS3Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family. (960 aa)
PSME2Proteasome activator complex subunit 2. (242 aa)
PSME1Proteasome activator complex subunit 1. (150 aa)
PSMD1026S proteasome non-ATPase regulatory subunit 10. (226 aa)
PSMD726S proteasome non-ATPase regulatory subunit 7. (322 aa)
EXOSC4Exosome complex component RRP41. (188 aa)
PSMC226S protease regulatory subunit 7; Belongs to the AAA ATPase family. (433 aa)
PSMB11Proteasome subunit beta. (261 aa)
PSMB5Proteasome subunit beta type-5. (211 aa)
PSMD9-126S proteasome non-ATPase regulatory subunit 9 isoform B. (205 aa)
SCARB1Scavenger receptor class B member 1 isoform A. (959 aa)
PSMB6Proteasome subunit beta. (227 aa)
KHSRPFar upstream element-binding protein 2 isoform B. (683 aa)
ANP32BAcidic leucine-rich nuclear phosphoprotein 32 family member E. (265 aa)
PSMD1326S proteasome non-ATPase regulatory subunit 13. (376 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (580 aa)
PSMA7Proteasome subunit alpha type. (248 aa)
YWHAB14-3-3 protein beta/alpha; Belongs to the 14-3-3 family. (300 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D0. (329 aa)
PSMF1Proteasome inhibitor PI31 subunit. (273 aa)
ZFP36L2Tis11B_N domain-containing protein. (90 aa)
ELAVL3ELAV-like protein; Belongs to the RRM elav family. (366 aa)
PSMD326S proteasome non-ATPase regulatory subunit 3. (521 aa)
PSMB3Proteasome subunit beta. (205 aa)
PSMC126S protease regulatory subunit 4; Belongs to the AAA ATPase family. (440 aa)
PSMD1126S proteasome non-ATPase regulatory subunit 11. (518 aa)
PSMC626S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (403 aa)
EXOSC9Exosome complex component RRP45. (439 aa)
PSMB2Proteasome subunit beta. (201 aa)
TOE1Target of EGR1 protein 1. (519 aa)
TNPO1Importin N-terminal domain-containing protein. (937 aa)
DCP2M7GpppN-mRNA hydrolase isoform B. (418 aa)
PSMD826S proteasome non-ATPase regulatory subunit 8. (257 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (617 aa)
PSMB9Proteasome subunit beta. (216 aa)
PSMB8Proteasome subunit beta. (282 aa)
DIS3L2RNB domain-containing protein. (138 aa)
PSMD626S proteasome non-ATPase regulatory subunit 6. (348 aa)
CUNH20orf196Uncharacterized protein. (227 aa)
XPO1Exportin-1. (1001 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
PSME4Proteasome activator complex subunit 4. (1808 aa)
PSMB7Proteasome subunit beta. (274 aa)
PSMD5-126S proteasome non-ATPase regulatory subunit 5 isoform B. (837 aa)
NUP214Nuclear pore complex protein Nup214 isoform A. (1560 aa)
FUBP3Far upstream element-binding protein 3 isoform A. (586 aa)
EXOSC2Exosome complex component RRP4. (294 aa)
SETProtein SET; Belongs to the nucleosome assembly protein (NAP) family. (228 aa)
PSMA1Proteasome subunit alpha type. (261 aa)
PSMC326S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (404 aa)
ZFP36L1Zinc finger protein 36, C3H1 type-like 1. (335 aa)
MAPKAPK3MAP kinase-activated protein kinase 3; Belongs to the protein kinase superfamily. (354 aa)
HYKKProteasome endopeptidase complex. (600 aa)
DIS3LDIS3-like exonuclease 1; Belongs to the RNR ribonuclease family. (1050 aa)
ANP32AAcidic leucine-rich nuclear phosphoprotein 32 family member A. (246 aa)
HNRNPAB-1Heterogeneous nuclear ribonucleoprotein A/B isoform B. (311 aa)
PSMD426S proteasome non-ATPase regulatory subunit 4 isoform A. (381 aa)
PSMB4Proteasome subunit beta; Belongs to the peptidase T1B family. (281 aa)
ELAVL4ELAV-like protein; Belongs to the RRM elav family. (379 aa)
PNLDC1Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform B. (534 aa)
PSMA3Proteasome subunit alpha type. (256 aa)
PSMD1426S proteasome non-ATPase regulatory subunit 14. (460 aa)
Y1Q_0022938Uncharacterized protein. (183 aa)
Y1Q_0005128Proteasome subunit beta. (277 aa)
PSMD126S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (963 aa)
DCP1AmRNA-decapping enzyme 1A. (426 aa)
YWHAZ14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (319 aa)
EXOSC1Exosome complex component CSL4. (133 aa)
EXOSC3Exosome complex component RRP40. (257 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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