STRINGSTRING
RAD9A RAD9A RPA1 RPA1 ZNF385B ZNF385B TBPL2 TBPL2 AKT3 AKT3 TBP TBP TAF5L TAF5L L3MBTL1-1 L3MBTL1-1 TBPL1 TBPL1 TTC5 TTC5 TMEM55B TMEM55B PRKAA1 PRKAA1 RFC4 RFC4 CCNG1 CCNG1 POU4F3-1 POU4F3-1 PPP2CA PPP2CA RAD50 RAD50 RMI1 RMI1 PML PML DYRK3 DYRK3 NUAK2 NUAK2 MDM4 MDM4 EXD2 EXD2 Y1Q_0000620 Y1Q_0000620 PPP2R1A PPP2R1A CHD3 CHD3 TAF13 TAF13 EHMT2 EHMT2 RPS27A RPS27A EXO1 EXO1 AKT3-2 AKT3-2 TDRD3 TDRD3 PDPK1 PDPK1 CDK2 CDK2 PRDM1 PRDM1 TP63 TP63 HIPK4 HIPK4 GATAD2A GATAD2A RBBP4-2 RBBP4-2 AURKB AURKB RFC3 RFC3 CCNA1-1 CCNA1-1 CDK5R1L CDK5R1L AKT2 AKT2 RPA3 RPA3 ZNF385D-2 ZNF385D-2 Y1Q_0020755 Y1Q_0020755 BRPF1 BRPF1 TAF6-1 TAF6-1 BRD7 BRD7 CSNK2A2 CSNK2A2 BLM BLM CDK1 CDK1 TP53 TP53 RAD1 RAD1 RICTOR RICTOR PRKAA1-2 PRKAA1-2 SETD9-1 SETD9-1 TAF2 TAF2 TP53INP1-1 TP53INP1-1 PPP1R13L PPP1R13L TAF10 TAF10 MAPKAP1 MAPKAP1 RBBP4 RBBP4 Y1Q_0023549 Y1Q_0023549 USP7 USP7 TXNDC11 TXNDC11 RMI2 RMI2 TOP3A TOP3A MEIOB MEIOB PRMT5 PRMT5 CDK3 CDK3 CHD5 CHD5 Y1Q_0006003 Y1Q_0006003 MTOR MTOR NOC2L NOC2L CHD3-2 CHD3-2 PRKAB1 PRKAB1 RFC5 RFC5 PPP2CB PPP2CB RFC2 RFC2 WRN WRN PRR5 PRR5 Y1Q_0012818 Y1Q_0012818 RFFL RFFL Y1Q_0007802 Y1Q_0007802 DAXX DAXX MAPK14 MAPK14 MAPK13 MAPK13 BARD1 BARD1 ATR ATR Y1Q_0004744 Y1Q_0004744 BANP BANP ANKRD12 ANKRD12 CHEK1 CHEK1 CREBBP CREBBP Y1Q_0024039 Y1Q_0024039 DCLRE1B DCLRE1B HIPK2 HIPK2 NUAK1 NUAK1 RECQL4 RECQL4 POU4F1 POU4F1 TAF7L TAF7L TAF9B TAF9B Y1Q_0006637 Y1Q_0006637 CSNK2B CSNK2B SUPT16H SUPT16H CDK5R2 CDK5R2 MAPKAPK5 MAPKAPK5 SCARB1 SCARB1 RNF34 RNF34 RAD9B-1 RAD9B-1 TAF1 TAF1 KXD1 KXD1 TAF5 TAF5 AIRE AIRE SSRP1 SSRP1 PIN1 PIN1 PHF20 PHF20 MLST8 MLST8 ING1 ING1 CSNK2A1 CSNK2A1 TAF11 TAF11 TAF4 TAF4 AURKA AURKA TP53RK TP53RK L3MBTL1 L3MBTL1 DNA2 DNA2 TP53INP2 TP53INP2 STK11 STK11 MRE11A MRE11A Y1Q_0016784 Y1Q_0016784 Y1Q_0016180 Y1Q_0016180 TOPBP1 TOPBP1 SMYD2 SMYD2 PPP1R13B PPP1R13B FOXP4 FOXP4 ANKRD11 ANKRD11 PIP4K2B PIP4K2B RHNO1 RHNO1 DYRK4 DYRK4 PRKAG1 PRKAG1 Y1Q_0002398 Y1Q_0002398 ATM ATM POU4F3-2 POU4F3-2 PPP1R13BB PPP1R13BB ING2 ING2 POU4F2 POU4F2 ATRIP ATRIP BRCA1 BRCA1 CDK5R1 CDK5R1 HUS1 HUS1 Y1Q_0017424 Y1Q_0017424 PIP4K2A PIP4K2A ZNF385C-1 ZNF385C-1 PRKAG2 PRKAG2 CCNA2 CCNA2 BRD1 BRD1 DYRK2 DYRK2 MDM2 MDM2 MAPK11 MAPK11 PIP4K2C PIP4K2C L3MBTL1-2 L3MBTL1-2 TAF4B TAF4B TMEM55A-1 TMEM55A-1 RBBP8-1 RBBP8-1 BRD9 BRD9 Y1Q_0010122 Y1Q_0010122 JMY JMY ANKRD31-1 ANKRD31-1 SLF1 SLF1 RAD17 RAD17 EHMT1 EHMT1 GATAD2B GATAD2B TAF3 TAF3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (392 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (584 aa)
ZNF385BZinc finger protein 385B isoform B. (505 aa)
TBPL2TATA box-binding protein-like protein 2. (331 aa)
AKT3Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (480 aa)
TBPTATA-box-binding protein. (301 aa)
TAF5LTAF5-like RNA polymerase II p300/CBP-associated factor-associated factor subunit 5L. (576 aa)
L3MBTL1-1Lethal(3)malignant brain tumor-like protein 1. (844 aa)
TBPL1TATA box-binding protein-like protein 1. (255 aa)
TTC5Tetratricopeptide repeat protein 5. (439 aa)
TMEM55BPhosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (208 aa)
PRKAA1Non-specific serine/threonine protein kinase. (527 aa)
RFC4Replication factor C subunit 4. (364 aa)
CCNG1Cyclin-G1; Belongs to the cyclin family. (256 aa)
POU4F3-1POU domain protein. (337 aa)
PPP2CASerine/threonine-protein phosphatase; Belongs to the SKP1 family. (474 aa)
RAD50DNA repair protein RAD50. (1448 aa)
RMI1RecQ-mediated genome instability protein 1. (524 aa)
PMLProtein PML isoform B. (586 aa)
DYRK3Protein kinase domain-containing protein. (581 aa)
NUAK2Protein kinase domain-containing protein. (615 aa)
MDM4Protein Mdm4. (513 aa)
EXD2Exonuclease 3'-5' domain-containing protein 2 isoform A. (621 aa)
Y1Q_0000620Protein kinase domain-containing protein. (901 aa)
PPP2R1ASerine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform. (643 aa)
CHD3Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
TAF13Transcription initiation factor TFIID subunit 13. (124 aa)
EHMT2Histone-lysine N-methyltransferase EHMT2 isoform A. (1311 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
EXO1Exonuclease 1. (775 aa)
AKT3-2Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (479 aa)
TDRD3Tudor domain-containing protein 3 isoform A. (743 aa)
PDPK13-phosphoinositide-dependent protein kinase 1. (515 aa)
CDK2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
PRDM1PR domain zinc finger protein 1. (833 aa)
TP63Tumor protein 63 (p63); Acts as a sequence specific DNA binding transcriptional activator or repressor. The isoforms contain a varying set of transactivation and auto-regulating transactivation inhibiting domains thus showing an isoform specific activity. May be required in conjunction with TP73/p73 for initiation of p53/TP53 dependent apoptosis in response to genotoxic insults and the presence of activated oncogenes. (730 aa)
HIPK4Homeodomain-interacting protein kinase 4. (514 aa)
GATAD2ATranscriptional repressor p66-alpha isoform C. (621 aa)
RBBP4-2WD_REPEATS_REGION domain-containing protein. (425 aa)
AURKBAurora kinase B; Belongs to the protein kinase superfamily. (372 aa)
RFC3Replication factor C subunit 3. (356 aa)
CCNA1-1Cyclin-A1 isoform C; Belongs to the cyclin family. (445 aa)
CDK5R1LCyclin-dependent kinase 5 activator 1. (295 aa)
AKT2Non-specific serine/threonine protein kinase. (270 aa)
RPA3Replication protein A subunit. (120 aa)
ZNF385D-2U1-type domain-containing protein. (92 aa)
Y1Q_00207555'-AMP-activated protein kinase subunit gamma-3-like. (99 aa)
BRPF1Uncharacterized protein. (1677 aa)
TAF6-1Transcription initiation factor TFIID subunit 6 isoform A. (666 aa)
BRD7Bromodomain-containing protein 7 isoform A. (664 aa)
CSNK2A2Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (392 aa)
BLMBloom syndrome protein. (1213 aa)
CDK1Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (303 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (385 aa)
RAD1Cell cycle checkpoint protein RAD1. (253 aa)
RICTORRapamycin-insensitive companion of mTOR. (1439 aa)
PRKAA1-2Non-specific serine/threonine protein kinase. (547 aa)
SETD9-1SET domain-containing protein 9 isoform A. (294 aa)
TAF2Transcription initiation factor TFIID subunit 2. (1145 aa)
TP53INP1-1Tumor protein p53-inducible nuclear protein 1 isoform B. (225 aa)
PPP1R13LRelA-associated inhibitor. (797 aa)
TAF10Transcription initiation factor TFIID subunit 10. (121 aa)
MAPKAP1Target of rapamycin complex 2 subunit MAPKAP1. (540 aa)
RBBP4Histone-binding protein RBBP4. (424 aa)
Y1Q_0023549Uncharacterized protein. (378 aa)
USP7Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family. (1080 aa)
TXNDC11Thioredoxin domain-containing protein 11. (901 aa)
RMI2RecQ-mediated genome instability protein 2. (75 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (983 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform A. (516 aa)
PRMT5Protein arginine N-methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (242 aa)
CDK3Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (348 aa)
CHD5Uncharacterized protein. (1864 aa)
Y1Q_0006003Tumor protein p73; Participates in the apoptotic response to DNA damage. Isoforms containing the transactivation domain are pro-apoptotic, isoforms lacking the domain are anti-apoptotic and block the function of p53 and transactivating p73 isoforms. May be a tumor suppressor protein. (688 aa)
MTORSerine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2538 aa)
NOC2LNucleolar complex 2-like protein. (785 aa)
CHD3-2Uncharacterized protein. (1966 aa)
PRKAB15'-AMP-activated protein kinase subunit beta-1. (302 aa)
RFC5Replication factor C subunit 5. (336 aa)
PPP2CBSerine/threonine-protein phosphatase. (309 aa)
RFC2Replication factor C subunit 2. (340 aa)
WRNWerner syndrome ATP-dependent helicase. (1443 aa)
PRR5Proline-rich protein 5 isoform B. (468 aa)
Y1Q_0012818Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (341 aa)
RFFLE3 ubiquitin-protein ligase rififylin. (348 aa)
Y1Q_0007802Transcription initiation factor TFIID subunit 4-like. (750 aa)
DAXXDeath domain-associated protein 6 isoform A. (758 aa)
MAPK14Mitogen-activated protein kinase. (360 aa)
MAPK13Mitogen-activated protein kinase. (1546 aa)
BARD1BRCA1-associated RING domain protein 1 isoform B. (792 aa)
ATRSerine/threonine-protein kinase ATR isoform A; Belongs to the PI3/PI4-kinase family. (2392 aa)
Y1Q_0004744Protein kinase domain-containing protein. (161 aa)
BANPProtein BANP. (508 aa)
ANKRD12Ankyrin repeat domain-containing protein 12. (761 aa)
CHEK1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (471 aa)
CREBBPCREB-binding protein isoform C. (2208 aa)
Y1Q_0024039KIX domain-containing protein. (131 aa)
DCLRE1B5' exonuclease Apollo isoform B. (1619 aa)
HIPK2Protein kinase domain-containing protein. (1175 aa)
NUAK1NUAK family SNF1-like kinase 1. (651 aa)
RECQL4ATP-dependent DNA helicase Q4 isoform A. (1385 aa)
POU4F1POU domain protein. (193 aa)
TAF7LTranscription initiation factor TFIID subunit 7-like. (353 aa)
TAF9BTranscription initiation factor TFIID subunit 9B. (255 aa)
Y1Q_0006637PRMT5_TIM domain-containing protein. (211 aa)
CSNK2BCasein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (249 aa)
SUPT16HFACT complex subunit SPT16. (1044 aa)
CDK5R2Cyclin-dependent kinase 5 activator 2. (278 aa)
MAPKAPK5MAP kinase-activated protein kinase 5 isoform B. (510 aa)
SCARB1Scavenger receptor class B member 1 isoform A. (959 aa)
RNF34E3 ubiquitin-protein ligase RNF34. (345 aa)
RAD9B-1Cell cycle checkpoint control protein RAD9B isoform B. (364 aa)
TAF1Transcription initiation factor TFIID subunit. (1966 aa)
KXD1KxDL motif-containing protein 1. (293 aa)
TAF5Transcription initiation factor TFIID subunit 5. (655 aa)
AIREAutoimmune regulator isoform B. (519 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
PIN1Peptidyl-prolyl cis-trans isomerase. (159 aa)
PHF20PHD finger protein 20. (1058 aa)
MLST8Target of rapamycin complex subunit LST8. (403 aa)
ING1Inhibitor of growth protein. (281 aa)
CSNK2A1Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (435 aa)
TAF11Transcription initiation factor TFIID subunit 11. (153 aa)
TAF4Transcription initiation factor TFIID subunit 4. (976 aa)
AURKAAurora kinase A; Belongs to the protein kinase superfamily. (450 aa)
TP53RKTP53-regulating kinase. (383 aa)
L3MBTL1SAM domain-containing protein. (897 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2. (1052 aa)
TP53INP2Tumor protein p53-inducible nuclear protein 2. (152 aa)
STK11Serine/threonine-protein kinase STK11; Belongs to the protein kinase superfamily. (418 aa)
MRE11ADouble-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (720 aa)
Y1Q_00167845'-AMP-activated protein kinase subunit gamma-3-like. (129 aa)
Y1Q_0016180Uncharacterized protein. (89 aa)
TOPBP1DNA topoisomerase 2-binding protein 1. (1514 aa)
SMYD2N-lysine methyltransferase SMYD2. (382 aa)
PPP1R13BApoptosis-stimulating of p53 protein 1. (1153 aa)
FOXP4Fork-head domain-containing protein. (617 aa)
ANKRD11Ankyrin repeat domain-containing protein 11. (2899 aa)
PIP4K2BPhosphatidylinositol 5-phosphate 4-kinase type-2 beta. (411 aa)
RHNO1RAD9. (261 aa)
DYRK4Dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform B. (710 aa)
PRKAG15'-AMP-activated protein kinase subunit gamma-1 isoform A. (330 aa)
Y1Q_0002398Uncharacterized protein. (72 aa)
ATMNon-specific serine/threonine protein kinase. (3063 aa)
POU4F3-2POU domain protein. (316 aa)
PPP1R13BBApoptosis-stimulating of p53 protein 1 isoform D. (1133 aa)
ING2Inhibitor of growth protein. (228 aa)
POU4F2POU domain protein. (316 aa)
ATRIPATR-interacting protein. (672 aa)
BRCA1Breast cancer type 1 susceptibility protein. (832 aa)
CDK5R1Cyclin-dependent kinase 5 activator. (306 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (284 aa)
Y1Q_0017424Uncharacterized protein. (235 aa)
PIP4K2APIPK domain-containing protein. (405 aa)
ZNF385C-1Zinc finger protein 385C isoform A. (1099 aa)
PRKAG25'-AMP-activated protein kinase subunit gamma-2. (567 aa)
CCNA2Cyclin-A2; Belongs to the cyclin family. (382 aa)
BRD1Uncharacterized protein. (734 aa)
DYRK2Dual specificity tyrosine-phosphorylation-regulated kinase 2. (526 aa)
MDM2E3 ubiquitin-protein ligase Mdm2; Belongs to the MDM2/MDM4 family. (494 aa)
MAPK11Mitogen-activated protein kinase. (361 aa)
PIP4K2CPhosphatidylinositol 5-phosphate 4-kinase type-2 gamma. (458 aa)
L3MBTL1-2Lethal(3)malignant brain tumor-like protein 1 isoform A. (807 aa)
TAF4BProteasome endopeptidase complex; Belongs to the peptidase T1A family. (1010 aa)
TMEM55A-1Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (257 aa)
RBBP8-1DNA endonuclease RBBP8 isoform B. (936 aa)
BRD9Bromodomain-containing protein 9 isoform B. (673 aa)
Y1Q_0010122Uncharacterized protein. (300 aa)
JMYJunction-mediating and-regulatory protein. (834 aa)
ANKRD31-1Putative ankyrin repeat domain-containing protein 31 isoform C. (1142 aa)
SLF1Ankyrin repeat domain-containing protein 32. (825 aa)
RAD17Cell cycle checkpoint protein RAD17. (696 aa)
EHMT1Histone-lysine N-methyltransferase EHMT1. (931 aa)
GATAD2BTranscriptional repressor p66-beta isoform B. (634 aa)
TAF3Transcription initiation factor TFIID subunit 3 isoform C. (1040 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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