STRINGSTRING
PARP2 PARP2 Y1Q_0024416 Y1Q_0024416 INO80C-1 INO80C-1 TFPT TFPT GPS1 GPS1 COPS2 COPS2 DDB2 DDB2 COPS7A COPS7A PARP3 PARP3 RPS27A RPS27A RUVBL1 RUVBL1 XPC XPC COPS7B COPS7B RAD23A RAD23A COPS5 COPS5 Y1Q_0020670 Y1Q_0020670 WDR76 WDR76 INO80 INO80 WBP1 WBP1 ACTR8 ACTR8 COPS3 COPS3 INO80D INO80D RAD23B RAD23B NFRKB NFRKB RBX1 RBX1 CUL4B CUL4B Y1Q_0015515 Y1Q_0015515 SCARB1 SCARB1 KXD1 KXD1 INO80E INO80E CUL4A CUL4A DDB1 DDB1 ACTR5 ACTR5 COPS4 COPS4 MCRS1 MCRS1 PARP1 PARP1 YY1 YY1 VWA5B1L VWA5B1L RPAP3 RPAP3 COPS6 COPS6 CETN3 CETN3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PARP2Poly [ADP-ribose] polymerase. (702 aa)
Y1Q_0024416Uncharacterized protein. (127 aa)
INO80C-1INO80 complex subunit C isoform A. (188 aa)
TFPTTCF3 fusion partner. (251 aa)
GPS1COP9 signalosome complex subunit 1 isoform A. (465 aa)
COPS2COP9 signalosome complex subunit 2 isoform B. (436 aa)
DDB2DNA damage-binding protein 2. (517 aa)
COPS7ACOP9 signalosome complex subunit 7a. (291 aa)
PARP3Poly [ADP-ribose] polymerase. (549 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
RUVBL1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
XPCDNA repair protein complementing XP-C cells. (955 aa)
COPS7BCOP9 signalosome complex subunit 7b. (293 aa)
RAD23AUV excision repair RAD23-like protein A. (357 aa)
COPS5COP9 signalosome complex subunit 5. (149 aa)
Y1Q_0020670COP9 signalosome complex subunit 4-like. (104 aa)
WDR76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (486 aa)
INO80DNA helicase INO80. (1539 aa)
WBP1WW domain-binding protein 1. (549 aa)
ACTR8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (624 aa)
COPS3COP9 signalosome complex subunit 3. (423 aa)
INO80DINO80 complex subunit D. (1029 aa)
RAD23BUV excision repair RAD23-like protein B. (397 aa)
NFRKBNuclear factor related to kappa-B-binding protein isoform B. (1254 aa)
RBX1E3 ubiquitin-protein ligase RBX1. (104 aa)
CUL4BCullin-4B; Belongs to the cullin family. (614 aa)
Y1Q_0015515Cullin domain-containing protein; Belongs to the cullin family. (160 aa)
SCARB1Scavenger receptor class B member 1 isoform A. (959 aa)
KXD1KxDL motif-containing protein 1. (293 aa)
INO80EINO80 complex subunit E isoform A. (253 aa)
CUL4ACULLIN_2 domain-containing protein; Belongs to the cullin family. (763 aa)
DDB1DNA damage-binding protein 1. (1140 aa)
ACTR5Actin-related protein 5; Belongs to the actin family. (557 aa)
COPS4COP9 signalosome complex subunit 4. (190 aa)
MCRS1Microspherule protein 1. (491 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1000 aa)
YY1Transcriptional repressor protein YY1. (243 aa)
VWA5B1LVon Willebrand factor A domain-containing protein 5B1 isoform C. (1274 aa)
RPAP3RNA polymerase II-associated protein 3. (652 aa)
COPS6COP9 signalosome complex subunit 6. (297 aa)
CETN3Centrin-3. (167 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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