STRINGSTRING
HIST1H2B5L HIST1H2B5L PSMD10 PSMD10 PSME1 PSME1 PSME2 PSME2 SFN SFN CHEK2 CHEK2 PSMA6 PSMA6 RECQL4 RECQL4 Y1Q_0016099 Y1Q_0016099 WEE2-1 WEE2-1 MCM5 MCM5 PSMC4 PSMC4 CHEK1 CHEK1 PIEZO2-2 PIEZO2-2 ANKRD12 ANKRD12 Y1Q_0001015 Y1Q_0001015 MCM3 MCM3 ATR ATR BARD1 BARD1 ORC2 ORC2 PSMC5 PSMC5 PSMA5 PSMA5 Y1Q_0009388 Y1Q_0009388 YWHAQ YWHAQ WRN WRN RFC2 RFC2 YWHAG YWHAG YWHAH YWHAH RFC5 RFC5 CDK3 CDK3 PSMD12 PSMD12 MEIOB MEIOB TOP3A TOP3A RMI2 RMI2 Y1Q_0005128 Y1Q_0005128 PSMD1 PSMD1 PIEZO1 PIEZO1 Y1Q_0004667 Y1Q_0004667 YWHAZ YWHAZ Y1Q_0017935 Y1Q_0017935 RAD1 RAD1 TP53 TP53 Y1Q_0014292 Y1Q_0014292 Y1Q_0020715 Y1Q_0020715 CDK1 CDK1 RAD9A RAD9A ORC3 ORC3 BLM BLM ORC6 ORC6 RPA3 RPA3 CNTD2 CNTD2 PSMD8 PSMD8 FAM38B FAM38B RNF169 RNF169 RAD17 RAD17 SLF1 SLF1 ANKRD31-1 ANKRD31-1 WDR41 WDR41 CCNB1 CCNB1 MCM7 MCM7 CLSPN CLSPN RBBP8-1 RBBP8-1 PSMB2 PSMB2 BABAM1 BABAM1 PKMYT1 PKMYT1 Y1Q_0012805 Y1Q_0012805 PSMC6 PSMC6 Y1Q_0014479 Y1Q_0014479 Y1Q_0018383 Y1Q_0018383 CDC6 CDC6 PSMD11 PSMD11 HUS1 HUS1 BRCA1 BRCA1 ATRIP ATRIP NSD2 NSD2 PSMC1 PSMC1 BRCC3 BRCC3 CCNB3 CCNB3 Y1Q_0014681 Y1Q_0014681 ATM ATM RHNO1 RHNO1 PSMB3 PSMB3 PSMD3 PSMD3 ANKRD11 ANKRD11 CTNNA3 CTNNA3 CMTR1-1 CMTR1-1 Y1Q_0007301 Y1Q_0007301 BRE BRE TOPBP1 TOPBP1 PSMF1 PSMF1 Y1Q_0016180 Y1Q_0016180 MRE11A MRE11A Y1Q_0012919 Y1Q_0012919 Y1Q_0018179 Y1Q_0018179 DNA2 DNA2 YWHAB YWHAB PIEZO2 PIEZO2 PSMA7 PSMA7 PSMD13 PSMD13 PIAS4 PIAS4 PSMB6 PSMB6 Y1Q_0000043 Y1Q_0000043 Y1Q_0006757 Y1Q_0006757 HIST1H4D HIST1H4D CDC45 CDC45 RAD9B-1 RAD9B-1 SCARB1 SCARB1 PSMD9-1 PSMD9-1 PSMB5 PSMB5 PSMB11 PSMB11 PSMC2 PSMC2 MCM10 MCM10 ORC5 ORC5 RFC3 RFC3 MCM4 MCM4 Y1Q_0003907 Y1Q_0003907 Y1Q_0003896 Y1Q_0003896 UBE2V2 UBE2V2 PSMB9 PSMB9 PSMB8 PSMB8 YWHAE YWHAE TP53BP1-1 TP53BP1-1 PSMD6 PSMD6 RNF168 RNF168 MCM2 MCM2 TM4SF19 TM4SF19 CDK2 CDK2 TDRD3 TDRD3 RCBTB1-2 RCBTB1-2 RCBTB1 RCBTB1 EXO1 EXO1 MCM8 MCM8 RPS27A RPS27A PSME4 PSME4 PSMB7 PSMB7 PSMD5-1 PSMD5-1 Y1Q_0003135 Y1Q_0003135 WEE1 WEE1 PSMA1 PSMA1 EXD2 EXD2 PSMC3 PSMC3 CCNB2 CCNB2 Y1Q_0001599 Y1Q_0001599 HYKK HYKK RMI1 RMI1 RAD50 RAD50 RFC4 RFC4 PSMD4 PSMD4 PSMB4 PSMB4 CDC7-1 CDC7-1 ORC1 ORC1 44G24.1 44G24.1 RPA1 RPA1 MCM9L MCM9L MCM9 MCM9 PSMA3 PSMA3 MCM6 MCM6 ORC4 ORC4 PSMD14 PSMD14 Y1Q_0015745 Y1Q_0015745 HIST1H2BF HIST1H2BF HIST2H2BE HIST2H2BE Y1Q_0020100 Y1Q_0020100 Y1Q_0020098 Y1Q_0020098 UBE2N UBE2N Y1Q_0022362 Y1Q_0022362 GTSE1 GTSE1 PSMD7 PSMD7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HIST1H2B5LHistone H2B; Belongs to the histone H2B family. (126 aa)
PSMD1026S proteasome non-ATPase regulatory subunit 10. (226 aa)
PSME1Proteasome activator complex subunit 1. (150 aa)
PSME2Proteasome activator complex subunit 2. (242 aa)
SFN14-3-3 protein sigma; Belongs to the 14-3-3 family. (246 aa)
CHEK2Serine/threonine-protein kinase Chk2 isoform B. (433 aa)
PSMA6Proteasome subunit alpha type. (252 aa)
RECQL4ATP-dependent DNA helicase Q4 isoform A. (1385 aa)
Y1Q_0016099Histone H2B; Belongs to the histone H2B family. (126 aa)
WEE2-1Wee1-like protein kinase. (592 aa)
MCM5DNA helicase; Belongs to the MCM family. (773 aa)
PSMC426S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (418 aa)
CHEK1Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (471 aa)
PIEZO2-2Piezo-type mechanosensitive ion channel component. (2595 aa)
ANKRD12Ankyrin repeat domain-containing protein 12. (761 aa)
Y1Q_0001015Reverse transcriptase domain-containing protein. (170 aa)
MCM3DNA helicase; Belongs to the MCM family. (772 aa)
ATRSerine/threonine-protein kinase ATR isoform A; Belongs to the PI3/PI4-kinase family. (2392 aa)
BARD1BRCA1-associated RING domain protein 1 isoform B. (792 aa)
ORC2Origin recognition complex subunit 2. (569 aa)
PSMC5Proteasome (Prosome, macropain) 26S subunit, ATPase, 5; Belongs to the AAA ATPase family. (411 aa)
PSMA5Proteasome subunit alpha type. (241 aa)
Y1Q_0009388Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
YWHAQ14-3-3 protein theta; Belongs to the 14-3-3 family. (267 aa)
WRNWerner syndrome ATP-dependent helicase. (1443 aa)
RFC2Replication factor C subunit 2. (340 aa)
YWHAG14-3-3 protein gamma; Belongs to the 14-3-3 family. (247 aa)
YWHAH14-3-3 protein eta; Belongs to the 14-3-3 family. (247 aa)
RFC5Replication factor C subunit 5. (336 aa)
CDK3Cyclin-dependent kinase 3; Belongs to the protein kinase superfamily. (348 aa)
PSMD1226S proteasome non-ATPase regulatory subunit 12. (441 aa)
MEIOBMeiosis-specific with OB domain-containing protein isoform A. (516 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (983 aa)
RMI2RecQ-mediated genome instability protein 2. (75 aa)
Y1Q_0005128Proteasome subunit beta. (277 aa)
PSMD126S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (963 aa)
PIEZO1Piezo-type mechanosensitive ion channel component 1. (229 aa)
Y1Q_0004667Uncharacterized protein. (92 aa)
YWHAZ14-3-3 protein zeta/delta; Belongs to the 14-3-3 family. (319 aa)
Y1Q_0017935Reverse transcriptase domain-containing protein. (228 aa)
RAD1Cell cycle checkpoint protein RAD1. (253 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (385 aa)
Y1Q_0014292Piezo_RRas_bdg domain-containing protein. (81 aa)
Y1Q_0020715Piezo_RRas_bdg domain-containing protein. (220 aa)
CDK1Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (303 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (392 aa)
ORC3Origin recognition complex subunit 3 isoform A. (713 aa)
BLMBloom syndrome protein. (1213 aa)
ORC6Origin recognition complex subunit 6. (267 aa)
RPA3Replication protein A subunit. (120 aa)
CNTD2Cyclin N-terminal domain-containing protein 2; Belongs to the cyclin family. (232 aa)
PSMD826S proteasome non-ATPase regulatory subunit 8. (257 aa)
FAM38BPiezo-type mechanosensitive ion channel component 2. (797 aa)
RNF169E3 ubiquitin-protein ligase RNF169 isoform B. (626 aa)
RAD17Cell cycle checkpoint protein RAD17. (696 aa)
SLF1Ankyrin repeat domain-containing protein 32. (825 aa)
ANKRD31-1Putative ankyrin repeat domain-containing protein 31 isoform C. (1142 aa)
WDR41WD repeat-containing protein 41. (459 aa)
CCNB1G2/mitotic-specific cyclin-B1 isoform B; Belongs to the cyclin family. (411 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
CLSPNClaspin. (1316 aa)
RBBP8-1DNA endonuclease RBBP8 isoform B. (936 aa)
PSMB2Proteasome subunit beta. (201 aa)
BABAM1BRISC and BRCA1-A complex member 1. (325 aa)
PKMYT1Membrane-associated tyrosine-and threonine-specific cdc2-inhibitory kinase. (554 aa)
Y1Q_0012805Histone H2B; Belongs to the histone H2B family. (118 aa)
PSMC626S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (403 aa)
Y1Q_0014479Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (124 aa)
Y1Q_0018383Histone H2B-like; Belongs to the histone H2B family. (152 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (549 aa)
PSMD1126S proteasome non-ATPase regulatory subunit 11. (518 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (284 aa)
BRCA1Breast cancer type 1 susceptibility protein. (832 aa)
ATRIPATR-interacting protein. (672 aa)
NSD2Uncharacterized protein. (1370 aa)
PSMC126S protease regulatory subunit 4; Belongs to the AAA ATPase family. (440 aa)
BRCC3Lys-63-specific deubiquitinase BRCC36. (261 aa)
CCNB3G2/mitotic-specific cyclin-B3; Belongs to the cyclin family. (435 aa)
Y1Q_0014681Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (119 aa)
ATMNon-specific serine/threonine protein kinase. (3063 aa)
RHNO1RAD9. (261 aa)
PSMB3Proteasome subunit beta. (205 aa)
PSMD326S proteasome non-ATPase regulatory subunit 3. (521 aa)
ANKRD11Ankyrin repeat domain-containing protein 11. (2899 aa)
CTNNA3Catenin alpha-3. (157 aa)
CMTR1-1E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (521 aa)
Y1Q_0007301Piezo-type mechanosensitive ion channel component 1-like. (506 aa)
BREBRCA1-A complex subunit BRE. (398 aa)
TOPBP1DNA topoisomerase 2-binding protein 1. (1514 aa)
PSMF1Proteasome inhibitor PI31 subunit. (273 aa)
Y1Q_0016180Uncharacterized protein. (89 aa)
MRE11ADouble-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (720 aa)
Y1Q_0012919Uncharacterized protein. (87 aa)
Y1Q_0018179PIEZO domain-containing protein. (254 aa)
DNA2DNA replication ATP-dependent helicase/nuclease DNA2. (1052 aa)
YWHAB14-3-3 protein beta/alpha; Belongs to the 14-3-3 family. (300 aa)
PIEZO2Piezo-type mechanosensitive ion channel component. (2510 aa)
PSMA7Proteasome subunit alpha type. (248 aa)
PSMD1326S proteasome non-ATPase regulatory subunit 13. (376 aa)
PIAS4E3 SUMO-protein ligase PIAS4. (541 aa)
PSMB6Proteasome subunit beta. (227 aa)
Y1Q_0000043Uncharacterized protein. (73 aa)
Y1Q_0006757Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (111 aa)
HIST1H4DHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
CDC45Cell division control 45-like protein. (501 aa)
RAD9B-1Cell cycle checkpoint control protein RAD9B isoform B. (364 aa)
SCARB1Scavenger receptor class B member 1 isoform A. (959 aa)
PSMD9-126S proteasome non-ATPase regulatory subunit 9 isoform B. (205 aa)
PSMB5Proteasome subunit beta type-5. (211 aa)
PSMB11Proteasome subunit beta. (261 aa)
PSMC226S protease regulatory subunit 7; Belongs to the AAA ATPase family. (433 aa)
MCM10MCM10-like protein. (868 aa)
ORC5Origin recognition complex subunit 5. (420 aa)
RFC3Replication factor C subunit 3. (356 aa)
MCM4DNA helicase; Belongs to the MCM family. (861 aa)
Y1Q_0003907MCM domain-containing protein. (120 aa)
Y1Q_0003896Reverse transcriptase domain-containing protein. (253 aa)
UBE2V2Ubiquitin-conjugating enzyme E2 variant 2. (144 aa)
PSMB9Proteasome subunit beta. (216 aa)
PSMB8Proteasome subunit beta. (282 aa)
YWHAE14-3-3 protein epsilon; Belongs to the 14-3-3 family. (255 aa)
TP53BP1-1Tumor suppressor p53-binding protein 1 isoform A. (2124 aa)
PSMD626S proteasome non-ATPase regulatory subunit 6. (348 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (589 aa)
MCM2DNA helicase; Belongs to the MCM family. (888 aa)
TM4SF19Transmembrane 4 L6 family member 19. (205 aa)
CDK2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
TDRD3Tudor domain-containing protein 3 isoform A. (743 aa)
RCBTB1-2BTB domain-containing protein. (595 aa)
RCBTB1RCC1 and BTB domain-containing protein 1. (566 aa)
EXO1Exonuclease 1. (775 aa)
MCM8DNA helicase MCM8; Belongs to the MCM family. (795 aa)
RPS27AUbiquitin-40S ribosomal protein S27a. (156 aa)
PSME4Proteasome activator complex subunit 4. (1808 aa)
PSMB7Proteasome subunit beta. (274 aa)
PSMD5-126S proteasome non-ATPase regulatory subunit 5 isoform B. (837 aa)
Y1Q_0003135Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (127 aa)
WEE1Wee1-like protein kinase. (1114 aa)
PSMA1Proteasome subunit alpha type. (261 aa)
EXD2Exonuclease 3'-5' domain-containing protein 2 isoform A. (621 aa)
PSMC326S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (404 aa)
CCNB2G2/mitotic-specific cyclin-B2; Belongs to the cyclin family. (398 aa)
Y1Q_0001599Reverse transcriptase domain-containing protein. (173 aa)
HYKKProteasome endopeptidase complex. (600 aa)
RMI1RecQ-mediated genome instability protein 1. (524 aa)
RAD50DNA repair protein RAD50. (1448 aa)
RFC4Replication factor C subunit 4. (364 aa)
PSMD426S proteasome non-ATPase regulatory subunit 4 isoform A. (381 aa)
PSMB4Proteasome subunit beta; Belongs to the peptidase T1B family. (281 aa)
CDC7-1Cell division cycle 7-related protein kinase isoform B. (672 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (949 aa)
44G24.1Histone H2B.3; Belongs to the histone H2B family. (142 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (584 aa)
MCM9LDNA helicase MCM9. (752 aa)
MCM9DNA helicase MCM9; Belongs to the MCM family. (463 aa)
PSMA3Proteasome subunit alpha type. (256 aa)
MCM6DNA helicase; Belongs to the MCM family. (822 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (436 aa)
PSMD1426S proteasome non-ATPase regulatory subunit 14. (460 aa)
Y1Q_0015745Uncharacterized protein. (257 aa)
HIST1H2BFHistone H2B; Belongs to the histone H2B family. (126 aa)
HIST2H2BEHistone H2B; Belongs to the histone H2B family. (126 aa)
Y1Q_0020100Histone H2B; Belongs to the histone H2B family. (126 aa)
Y1Q_0020098Histone H2B; Belongs to the histone H2B family. (166 aa)
UBE2NUbiquitin-conjugating enzyme E2 N. (112 aa)
Y1Q_0022362Histone H2B.3-like. (135 aa)
GTSE1G2 and S phase-expressed protein 1. (747 aa)
PSMD726S proteasome non-ATPase regulatory subunit 7. (322 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (22%) [HD]