STRINGSTRING
RBBP4 RBBP4 ERCC3 ERCC3 TBPL2 TBPL2 GTF2H5 GTF2H5 TBP TBP MTA2 MTA2 POLR2H POLR2H ZNRD1 ZNRD1 GTF2H4 GTF2H4 GTF2H1 GTF2H1 POLR1B POLR1B CHD3 CHD3 TTF1 TTF1 POLR1C POLR1C ERCC6 ERCC6 GATAD2A GATAD2A RBBP4-2 RBBP4-2 TWISTNB TWISTNB ERCC2 ERCC2 CD3EAP CD3EAP TAF1C TAF1C RRN3 RRN3 CHD5 CHD5 MNAT1 MNAT1 CHD3-2 CHD3-2 TAF1B TAF1B POLR1E POLR1E POLR2F POLR2F POLR2L-2 POLR2L-2 DMTF1 DMTF1 GTF2H3 GTF2H3 MTA1-2 MTA1-2 ACRC-1 ACRC-1 AIRE AIRE POLR2L-1 POLR2L-1 POLR2E POLR2E TAF1D TAF1D TAF1A-1 TAF1A-1 MTA1 MTA1 POLR1A POLR1A UBTF UBTF CDK7 CDK7 GTF2H2 GTF2H2 CCNH CCNH GATAD2B GATAD2B
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RBBP4Histone-binding protein RBBP4. (424 aa)
ERCC3TFIIH basal transcription factor complex helicase XPB subunit. (779 aa)
TBPL2TATA box-binding protein-like protein 2. (331 aa)
GTF2H5General transcription factor IIH subunit 5. (115 aa)
TBPTATA-box-binding protein. (301 aa)
MTA2Uncharacterized protein. (676 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (161 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (404 aa)
GTF2H1L-lactate dehydrogenase. (910 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1078 aa)
CHD3Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
TTF1Transcription termination factor 1. (476 aa)
POLR1CDNA-directed RNA polymerases I and III subunit RPAC1. (346 aa)
ERCC6DNA excision repair protein ERCC-6. (1491 aa)
GATAD2ATranscriptional repressor p66-alpha isoform C. (621 aa)
RBBP4-2WD_REPEATS_REGION domain-containing protein. (425 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (317 aa)
ERCC2TFIIH basal transcription factor complex helicase XPD subunit. (795 aa)
CD3EAPDNA-directed RNA polymerase I subunit RPA34. (226 aa)
TAF1CTATA box-binding protein-associated factor RNA polymerase I subunit C. (117 aa)
RRN3RNA polymerase I-specific transcription initiation factor RRN3. (617 aa)
CHD5Uncharacterized protein. (1864 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
CHD3-2Uncharacterized protein. (1966 aa)
TAF1BTATA box-binding protein-associated factor RNA polymerase I subunit B. (592 aa)
POLR1EDNA-directed RNA polymerase I subunit RPA49. (417 aa)
POLR2FDNA-directed RNA polymerases I, II, and III subunit RPABC2. (127 aa)
POLR2L-2DNA-directed RNA polymerases I, II, and III subunit RPABC5. (74 aa)
DMTF1Cyclin-D-binding Myb-like transcription factor 1 isoform B. (804 aa)
GTF2H3General transcription factor IIH subunit 3. (328 aa)
MTA1-2Uncharacterized protein. (694 aa)
ACRC-1Acidic repeat-containing protein isoform B. (498 aa)
AIREAutoimmune regulator isoform B. (519 aa)
POLR2L-1DNA-directed RNA polymerases I, II, and III subunit RPABC5. (104 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (231 aa)
TAF1DTATA box-binding protein-associated factor RNA polymerase I subunit D. (330 aa)
TAF1A-1TATA box-binding protein-associated factor RNA polymerase I subunit A isoform B. (454 aa)
MTA1Metastasis-associated protein MTA1. (590 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1689 aa)
UBTFNucleolar transcription factor 1 isoform B. (711 aa)
CDK7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
GTF2H2General transcription factor IIH subunit. (395 aa)
CCNHCyclin-H; Belongs to the cyclin family. (247 aa)
GATAD2BTranscriptional repressor p66-beta isoform B. (634 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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