STRINGSTRING
DHX38 DHX38 Y1Q_0006765 Y1Q_0006765 SRSF3 SRSF3 CPSF3 CPSF3 NCBP2 NCBP2 SRSF1 SRSF1 RNPS1 RNPS1 PCF11-1 PCF11-1 THOC5 THOC5 SRSF9 SRSF9 SNRPD3 SNRPD3 TPRG1L TPRG1L CPSF4L CPSF4L CPSF4-1 CPSF4-1 FYTTD1 FYTTD1 SREK1 SREK1 PABPN1L PABPN1L SNRPB SNRPB THOC3 THOC3 NUDT21 NUDT21 SRRM1 SRRM1 TPRG1-1 TPRG1-1 SYMPKL SYMPKL SYMPK SYMPK THOC7 THOC7 CDC40 CDC40 SLBPL SLBPL ZC3H13-1 ZC3H13-1 ZNF318 ZNF318 LSM11 LSM11 CSTF3 CSTF3 SRSF5 SRSF5 SLU7 SLU7 CPSF1-2 CPSF1-2 MAGOH MAGOH SRSF7 SRSF7 Y1Q_0008512 Y1Q_0008512 EIF4A3-2 EIF4A3-2 POLDIP3 POLDIP3 CUNH12orf50 CUNH12orf50 CHTOP CHTOP SNRPF SNRPF SRSF4 SRSF4 CPSF6 CPSF6 MSL1 MSL1 FIP1L1 FIP1L1 SLBP SLBP Y1Q_0021324 Y1Q_0021324 CPSF2 CPSF2 WDR25 WDR25 PAPOLA PAPOLA SNRPG SNRPG Y1Q_0013532 Y1Q_0013532 DDX39A DDX39A SRSF6 SRSF6 CSTF1 CSTF1 CPSF7 CPSF7 WDR33 WDR33 CLP1 CLP1 RBM8A RBM8A ALYREF ALYREF U2AF1-1 U2AF1-1 PABPN1 PABPN1 THOC6 THOC6 Y1Q_0015581 Y1Q_0015581 THOC2 THOC2 CSTF2-1 CSTF2-1 CPSF1 CPSF1 SRSF11-1 SRSF11-1 THOC1 THOC1 SARNP SARNP NCBP1 NCBP1 SNRPE SNRPE ZC3H11A ZC3H11A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DHX38Uncharacterized protein. (1102 aa)
Y1Q_0006765Uncharacterized protein. (135 aa)
SRSF3Serine/arginine-rich splicing factor 3. (211 aa)
CPSF3Cleavage and polyadenylation specificity factor subunit 3. (691 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
SRSF1Serine/arginine-rich splicing factor 1. (196 aa)
RNPS1RNA-binding protein with serine-rich domain 1. (307 aa)
PCF11-1Pre-mRNA cleavage complex 2 protein Pcf11 isoform A. (1620 aa)
THOC5THO complex subunit 5-like protein. (707 aa)
SRSF9Serine/arginine-rich splicing factor 9. (239 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
TPRG1LTumor protein p63-regulated 1-like protein. (190 aa)
CPSF4LPutative cleavage and polyadenylation specificity factor subunit 4-like protein. (261 aa)
CPSF4-1Cleavage and polyadenylation specificity factor subunit 4 isoform B. (212 aa)
FYTTD1UAP56-interacting factor. (312 aa)
SREK1Splicing regulatory glutamine/lysine-rich protein 1. (695 aa)
PABPN1LEmbryonic polyadenylate-binding protein 2. (249 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
THOC3THO complex subunit 3. (323 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform A. (791 aa)
TPRG1-1Tumor protein p63-regulated 1 protein isoform C. (350 aa)
SYMPKLSymplekin. (501 aa)
SYMPKSymplekin. (702 aa)
THOC7THO complex subunit 7-like protein. (205 aa)
CDC40Pre-mRNA-processing factor 17. (537 aa)
SLBPLHistone RNA hairpin-binding protein. (245 aa)
ZC3H13-1Zinc finger CCCH domain-containing protein 13 isoform A. (1355 aa)
ZNF318Zinc finger protein 318. (2129 aa)
LSM11U7 snRNA-associated Sm-like protein LSm11. (202 aa)
CSTF3Cleavage stimulation factor subunit 3. (718 aa)
SRSF5Serine/arginine-rich splicing factor 5. (264 aa)
SLU7Pre-mRNA-splicing factor SLU7. (612 aa)
CPSF1-2Amelogenin-like. (1015 aa)
MAGOHMago nashi-like protein. (146 aa)
SRSF7Serine/arginine-rich splicing factor 7. (171 aa)
Y1Q_0008512RRM domain-containing protein. (134 aa)
EIF4A3-2Uncharacterized protein; Belongs to the DEAD box helicase family. (409 aa)
POLDIP3Polymerase delta-interacting protein 3. (417 aa)
CUNH12orf50zf-CCCH_3 domain-containing protein. (378 aa)
CHTOPChromatin target of PRMT1 protein. (270 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
SRSF4Serine/arginine-rich splicing factor 4 isoform B. (299 aa)
CPSF6Cleavage and polyadenylation specificity factor subunit 6 isoform A. (479 aa)
MSL1Male-specific lethal 1-like protein isoform A. (1076 aa)
FIP1L1Pre-mRNA 3'-end-processing factor FIP1. (612 aa)
SLBPHistone RNA hairpin-binding protein. (268 aa)
Y1Q_0021324SLBP_RNA_bind domain-containing protein. (423 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
WDR25WD repeat-containing protein 25 isoform A. (505 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (775 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
Y1Q_0013532Ankyrin repeat domain-containing protein 9-like. (296 aa)
DDX39AATP-dependent RNA helicase DDX39A isoform A. (459 aa)
SRSF6Serine/arginine-rich splicing factor 6. (329 aa)
CSTF1Cleavage stimulation factor subunit 1. (492 aa)
CPSF7Cleavage and polyadenylation specificity factor subunit 7. (493 aa)
WDR33Pre-mRNA 3' end processing protein WDR33. (1096 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (425 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
ALYREFTHO complex subunit 4. (216 aa)
U2AF1-1Splicing factor U2AF subunit isoform B. (272 aa)
PABPN1Polyadenylate-binding protein 2. (215 aa)
THOC6THO complex subunit 6-like protein. (332 aa)
Y1Q_0015581Pre-mRNA 3'-end-processing factor FIP1-like. (550 aa)
THOC2THO complex subunit 2. (1594 aa)
CSTF2-1Cleavage stimulation factor subunit 2 isoform A. (549 aa)
CPSF1Cleavage and polyadenylation specificity factor subunit 1. (360 aa)
SRSF11-1Serine/arginine-rich splicing factor 11 isoform B. (459 aa)
THOC1THO complex subunit 1. (592 aa)
SARNPSAP domain-containing ribonucleoprotein. (210 aa)
NCBP1Nuclear cap-binding protein subunit 1. (794 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
ZC3H11AZinc finger CCCH domain-containing protein 11A. (169 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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