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RPL22L1 RPL22L1 PNO1 PNO1 TSR3 TSR3 Y1Q_0004251 Y1Q_0004251 RPL34 RPL34 RPP14 RPP14 EBNA1BP2 EBNA1BP2 DIS3L2 DIS3L2 BOP1L BOP1L RPS5 RPS5 RPL11-1 RPL11-1 RPL7 RPL7 RPS20 RPS20 TSR1 TSR1 EXOSC5 EXOSC5 RBM28 RBM28 EXOSC8 EXOSC8 ERI1 ERI1 RPL15 RPL15 RPL21 RPL21 DDX28 DDX28 BMS1 BMS1 BMS1L BMS1L EXOSC3 EXOSC3 EXOSC1 EXOSC1 RPL23A RPL23A WDR3 WDR3 RPL30 RPL30 DIMT1 DIMT1 SKIV2L2 SKIV2L2 RPL37 RPL37 RPL17 RPL17 DCAF13 DCAF13 RPL10L RPL10L XRN2 XRN2 RIOK1 RIOK1 FBL FBL RPP40 RPP40 UTP11L UTP11L RPL29 RPL29 GNL3 GNL3 RPL3-2 RPL3-2 SNU13 SNU13 CSNK1E-2 CSNK1E-2 NOL12 NOL12 RPL13A RPL13A FCF1 FCF1 DIS3 DIS3 LTV1 LTV1 MPHOSPH6 MPHOSPH6 RPL36A RPL36A LAS1L LAS1L NIP7 NIP7 NOB1 NOB1 EXOSC4 EXOSC4 NGDN NGDN GNL3L GNL3L RPL8 RPL8 RRP1B RRP1B PWP2 PWP2 NOC4L NOC4L RPS26 RPS26 DHX37 DHX37 RPL6 RPL6 WBSCR27 WBSCR27 PDCD11 PDCD11 RPL38 RPL38 RPL31 RPL31 RPL35 RPL35 Y1Q_0006266 Y1Q_0006266 RPP30-1 RPP30-1 UTP4 UTP4 WDR18 WDR18 DDX49 DDX49 NOP56 NOP56 RPS6 RPS6 PELP1 PELP1 WDR43 WDR43 DIEXF DIEXF RPL19 RPL19 RPL23 RPL23 RPS9 RPS9 RPS4X RPS4X UTP14A UTP14A ISG20L2 ISG20L2 NOP14 NOP14 RPL9 RPL9 RPL27 RPL27 EXOSC9 EXOSC9 RPL7L1 RPL7L1 KRR1 KRR1 RPL18A RPL18A RIOK3 RIOK3 TEX10 TEX10 RIOK2 RIOK2 RPS23 RPS23 WDR36 WDR36 UTP15 UTP15 MCC MCC NCL NCL THUMPD1 THUMPD1 ERI2 ERI2 TBL3 TBL3 RPL3 RPL3 RPS2 RPS2 IMP4 IMP4 NOL11 NOL11 COPRS COPRS RSAD1 RSAD1 UTP18 UTP18 Y1Q_0009070 Y1Q_0009070 RPL22 RPL22 EXOSC10 EXOSC10 RPLP0 RPLP0 PES1 PES1 DDX52 DDX52 UTP3-1 UTP3-1 BOP1 BOP1 WDR46 WDR46 RPS18 RPS18 WBSCR22 WBSCR22 RPS7 RPS7 FTSJ3 FTSJ3 NOP58 NOP58 WDR12 WDR12 WDR12-2 WDR12-2 WDR75 WDR75 IMP3 IMP3 BYSL BYSL RPL36 RPL36 RPL27A RPL27A NOL9-1 NOL9-1 RRP7A RRP7A DDX47 DDX47 Y1Q_0020079 Y1Q_0020079 UTP20 UTP20 RPL37A RPL37A RPS19 RPS19 NOL6 NOL6 RPP25L RPP25L HEATR1 HEATR1 RTCA RTCA RPL5 RPL5 RPP21 RPP21 RPL26L1 RPL26L1 CSNK1E CSNK1E RCL1 RCL1 DIS3L DIS3L RPL4 RPL4 AEN AEN RPP25-1 RPP25-1 MPHOSPH10 MPHOSPH10 NAT10 NAT10 Y1Q_0000679 Y1Q_0000679 RPS13 RPS13 Y1Q_0002875 Y1Q_0002875 NOP2 NOP2 EMG1 EMG1 RPL24 RPL24 RRP9 RRP9 RPL12 RPL12 EXOSC2 EXOSC2 RPL7A RPL7A REXO4 REXO4 RPL18 RPL18 RPL28 RPL28
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPL22L160S ribosomal protein L22-like 1. (121 aa)
PNO1RNA-binding protein PNO1. (193 aa)
TSR3Ribosome biogenesis TSR3-like protein. (168 aa)
Y1Q_0004251RL10P_insert domain-containing protein. (178 aa)
RPL3460S ribosomal protein L34. (117 aa)
RPP14Ribonuclease P protein subunit p14. (133 aa)
EBNA1BP2Putative rRNA-processing protein EBP2. (302 aa)
DIS3L2RNB domain-containing protein. (138 aa)
BOP1LRibosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (649 aa)
RPS540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (514 aa)
RPL11-160S ribosomal protein L11 isoform A; Belongs to the universal ribosomal protein uL5 family. (179 aa)
RPL760S ribosomal protein L7. (223 aa)
RPS2040S ribosomal protein S20. (119 aa)
TSR1Pre-rRNA-processing TSR1-like protein. (630 aa)
EXOSC5Exosome complex component RRP46. (200 aa)
RBM28RNA-binding protein 28. (684 aa)
EXOSC8Exosome complex component RRP43. (269 aa)
ERI13'-5' exoribonuclease 1. (339 aa)
RPL15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (186 aa)
RPL2160S ribosomal protein L21. (147 aa)
DDX28Putative ATP-dependent RNA helicase DDX28. (301 aa)
BMS1Ribosome biogenesis BMS1-like protein. (879 aa)
BMS1LRibosome biogenesis BMS1-like protein. (399 aa)
EXOSC3Exosome complex component RRP40. (257 aa)
EXOSC1Exosome complex component CSL4. (133 aa)
RPL23A60S ribosomal protein L23a. (144 aa)
WDR3WD repeat-containing protein 3. (941 aa)
RPL3060S ribosomal protein L30. (175 aa)
DIMT1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (317 aa)
SKIV2L2Superkiller viralicidic activity 2-like 2. (1033 aa)
RPL37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
RPL1760S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (264 aa)
DCAF13DDB1-and CUL4-associated factor 13. (445 aa)
RPL10L60S ribosomal protein L10. (77 aa)
XRN25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (955 aa)
RIOK1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (566 aa)
FBLrRNA 2'-O-methyltransferase fibrillarin. (295 aa)
RPP40Ribonuclease P protein subunit p40 isoform B. (373 aa)
UTP11LU3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (253 aa)
RPL2960S ribosomal protein L29. (260 aa)
GNL3Guanine nucleotide-binding protein-like 3. (559 aa)
RPL3-2Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (403 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (111 aa)
CSNK1E-2Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (418 aa)
NOL12Nucleolar protein 12. (209 aa)
RPL13A60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (203 aa)
FCF1rRNA-processing FCF1-like protein. (198 aa)
DIS3Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family. (960 aa)
LTV1LTV1-like protein. (403 aa)
MPHOSPH6M-phase phosphoprotein 6. (149 aa)
RPL36A60S ribosomal protein L36a isoform B; Belongs to the eukaryotic ribosomal protein eL42 family. (150 aa)
LAS1LRibosomal biogenesis protein LAS1L. (604 aa)
NIP760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (194 aa)
NOB1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (425 aa)
EXOSC4Exosome complex component RRP41. (188 aa)
NGDNNeuroguidin. (331 aa)
GNL3LGuanine nucleotide-binding protein-like 3-like protein isoform C. (753 aa)
RPL860S ribosomal protein L8. (267 aa)
RRP1BRibosomal RNA processing 1-like protein B. (1017 aa)
PWP2Periodic tryptophan 2-like protein. (910 aa)
NOC4LNucleolar complex 4-like protein isoform B. (554 aa)
RPS2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
DHX37Putative ATP-dependent RNA helicase DHX37. (1148 aa)
RPL660S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (257 aa)
WBSCR27Williams-Beuren syndrome chromosomal region 27 protein. (139 aa)
PDCD11RRP5-like protein. (1825 aa)
RPL3860S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
RPL3160S ribosomal protein L31. (180 aa)
RPL3560S ribosomal protein L35. (123 aa)
Y1Q_0006266Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (184 aa)
RPP30-1Ribonuclease P protein subunit p30 isoform B. (273 aa)
UTP4Cirhin. (683 aa)
WDR18WD repeat-containing protein 18. (417 aa)
DDX49Putative ATP-dependent RNA helicase DDX49; Belongs to the DEAD box helicase family. (479 aa)
NOP56Nucleolar protein 56. (541 aa)
RPS640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
PELP1Proline-, glutamic acid-and leucine-rich protein 1. (605 aa)
WDR43WD repeat-containing protein 43 isoform A. (595 aa)
DIEXFDigestive organ expansion factor-like protein. (754 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
RPL2360S ribosomal protein L23 isoform A; Belongs to the universal ribosomal protein uL14 family. (140 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
RPS4X40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (280 aa)
UTP14AU3 small nucleolar RNA-associated 14-like protein A. (742 aa)
ISG20L2Interferon-stimulated exonuclease-like 2. (323 aa)
NOP14Nucleolar protein 14. (841 aa)
RPL960S ribosomal protein L9. (143 aa)
RPL2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (170 aa)
EXOSC9Exosome complex component RRP45. (439 aa)
RPL7L160S ribosomal protein L7-like 1. (247 aa)
KRR1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (379 aa)
RPL18A60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
RIOK3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (519 aa)
TEX10Testis-expressed sequence 10 protein isoform B. (889 aa)
RIOK2Serine/threonine-protein kinase RIO2. (552 aa)
RPS2340S ribosomal protein S23 isoform A; Belongs to the universal ribosomal protein uS12 family. (143 aa)
WDR36WD repeat-containing protein 36. (898 aa)
UTP15U3 small nucleolar RNA-associated 15-like protein. (519 aa)
MCCColorectal mutant cancer protein isoform A. (979 aa)
NCLNucleolin. (654 aa)
THUMPD1THUMP domain-containing protein 1. (278 aa)
ERI2ERI1 exoribonuclease 2. (242 aa)
TBL3Transducin beta-like protein 3. (811 aa)
RPL360S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (407 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (221 aa)
IMP4U3 small nucleolar ribonucleoprotein IMP4. (291 aa)
NOL11Nucleolar protein 11. (723 aa)
COPRSUncharacterized protein. (831 aa)
RSAD1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (481 aa)
UTP18U3 small nucleolar RNA-associated 18-like protein. (502 aa)
Y1Q_0009070Olfactory receptor. (317 aa)
RPL2260S ribosomal protein L22. (125 aa)
EXOSC10Exosome component 10; Belongs to the spermidine/spermine synthase family. (1132 aa)
RPLP060S acidic ribosomal protein P0. (367 aa)
PES1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (595 aa)
DDX52Putative ATP-dependent RNA helicase DDX52. (612 aa)
UTP3-1Something about silencing protein 10 isoform A. (478 aa)
BOP1Ribosome biogenesis protein BOP1. (188 aa)
WDR46WD repeat-containing protein 46. (640 aa)
RPS1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
WBSCR22Putative 18S rRNA (Guanine-N(7))-methyltransferase. (282 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
FTSJ3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (830 aa)
NOP58Nucleolar protein 58. (515 aa)
WDR12Ribosome biogenesis protein WDR12. (228 aa)
WDR12-2WD_REPEATS_REGION domain-containing protein. (219 aa)
WDR75WD repeat-containing protein 75. (834 aa)
IMP3U3 small nucleolar ribonucleoprotein IMP3. (187 aa)
BYSLBystin. (440 aa)
RPL3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (186 aa)
RPL27A60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
NOL9-1Polynucleotide 5'-hydroxyl-kinase NOL9 isoform B. (434 aa)
RRP7ARibosomal RNA-processing 7-like protein A. (277 aa)
DDX47Putative ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family. (380 aa)
Y1Q_0020079Uncharacterized protein. (122 aa)
UTP20Small subunit processome component 20-like protein. (2809 aa)
RPL37A60S ribosomal protein L37a. (92 aa)
RPS1940S ribosomal protein S19. (515 aa)
NOL6Nucleolar protein 6. (1172 aa)
RPP25LRibonuclease P protein subunit p25-like protein. (196 aa)
HEATR1HEAT repeat-containing protein 1. (2052 aa)
RTCARNA 3'-terminal phosphate cyclase. (365 aa)
RPL560S ribosomal protein L5. (317 aa)
RPP21Ribonuclease P protein subunit p21 isoform B. (228 aa)
RPL26L160S ribosomal protein L26-like 1. (116 aa)
CSNK1ECasein kinase I isoform B; Belongs to the protein kinase superfamily. (446 aa)
RCL1RNA 3'-terminal phosphate cyclase-like protein. (372 aa)
DIS3LDIS3-like exonuclease 1; Belongs to the RNR ribonuclease family. (1050 aa)
RPL460S ribosomal protein L4. (363 aa)
AENApoptosis-enhancing nuclease. (416 aa)
RPP25-1Ribonuclease P protein subunit p25 isoform C. (241 aa)
MPHOSPH10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (670 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1748 aa)
Y1Q_0000679Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (111 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (147 aa)
Y1Q_0002875Uncharacterized protein. (581 aa)
NOP2Putative 28S rRNA (Cytosine(4447)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (776 aa)
EMG1Ribosomal RNA small subunit methyltransferase NEP1. (226 aa)
RPL2460S ribosomal protein L24. (157 aa)
RRP9U3 small nucleolar RNA-interacting protein 2 isoform B. (487 aa)
RPL1260S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (147 aa)
EXOSC2Exosome complex component RRP4. (294 aa)
RPL7A60S ribosomal protein L7a. (266 aa)
REXO4RNA exonuclease 4. (422 aa)
RPL1860S ribosomal protein L18. (188 aa)
RPL2860S ribosomal protein L28. (153 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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