57 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHEBL1	GTPase RhebL1. (184 aa)
	SCMH1	Polycomb protein SCMH1 isoform A. (709 aa)
	CRYGN	Gamma-crystallin N; Belongs to the beta/gamma-crystallin family. (177 aa)
	RHEB	GTP-binding protein Rheb. (184 aa)
	EZH1	Uncharacterized protein. (751 aa)
	RRAGB	Ras-related GTP-binding protein A. (327 aa)
	PHC1	Polyhomeotic-like protein 1 isoform A. (688 aa)
	Y1Q_0010995	Neuronal pentraxin-1-like. (527 aa)
	RPTOR	Regulatory-associated protein of mTOR isoform A. (1352 aa)
	MTA1	Metastasis-associated protein MTA1. (590 aa)
	EZH2	Histone-lysine N-methyltransferase EZH2 isoform A. (806 aa)
	SALL4	Sal-like protein 4. (1108 aa)
	SNAI1	Zinc finger protein SNAI1. (420 aa)
	CBX8	Chromobox protein-like protein 8. (366 aa)
	CBX4	E3 SUMO-protein ligase CBX4. (456 aa)
	CBX2	Chromobox protein-like protein 2. (350 aa)
	MTA1-2	Uncharacterized protein. (694 aa)
	Y1Q_0018793	Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (2196 aa)
	AIRE	Autoimmune regulator isoform B. (519 aa)
	RRAGD-2	Uncharacterized protein. (410 aa)
	SLC38A9	Sodium-coupled neutral amino acid transporter 9. (561 aa)
	SALL2	Sal-like protein 2. (343 aa)
	PHC2L	Polyhomeotic-like protein 2 isoform B. (525 aa)
	SCML2	SAM domain-containing protein. (805 aa)
	MLST8	Target of rapamycin complex subunit LST8. (403 aa)
	LAMTOR2	Ragulator complex protein LAMTOR2. (173 aa)
	GATAD2B	Transcriptional repressor p66-beta isoform B. (634 aa)
	MAF1	Repressor of RNA polymerase III transcription MAF1; Element of the TORC1 signaling pathway that acts as a mediator of diverse signals and that represses RNA polymerase III transcription. Inhibits the de novo assembly of TFIIIB onto DNA. Belongs to the MAF1 family. (246 aa)
	LAMTOR3	Ragulator complex protein LAMTOR3. (124 aa)
	EED	Polycomb protein EED. (427 aa)
	Y1Q_0007014	Repressor of RNA polymerase III transcription MAF1-like protein. (88 aa)
	NPTXR	Neuronal pentraxin receptor. (502 aa)
	CBX6	Chromobox protein-like protein 6 isoform A. (427 aa)
	CBX7-1	Chromobox protein-like protein 7 isoform B. (252 aa)
	RRAGD	Ras-related GTP-binding protein D. (333 aa)
	PHC3	Polyhomeotic-like protein 3. (581 aa)
	MECOM	MDS1 and EVI1 complex locus protein EVI1 isoform A. (1159 aa)
	LAMTOR5	Ragulator complex protein LAMTOR5. (91 aa)
	RING1	E3 ubiquitin-protein ligase RING1. (327 aa)
	CHD3-2	Uncharacterized protein. (1966 aa)
	RERE	Arginine-glutamic acid dipeptide repeats protein isoform A. (1134 aa)
	MTOR	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2538 aa)
	CHD5	Uncharacterized protein. (1864 aa)
	SUZ12	Polycomb protein SUZ12. (667 aa)
	NPTX2	Neuronal pentraxin-2. (347 aa)
	TXNDC11	Thioredoxin domain-containing protein 11. (901 aa)
	MTA2	Uncharacterized protein. (676 aa)
	LAMTOR4	Ragulator complex protein LAMTOR4. (99 aa)
	ATN1	Atrophin-1 isoform B. (644 aa)
	CHD3	Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
	RNF2	E3 ubiquitin-protein ligase RING2 isoform B. (404 aa)
	GATAD2A	Transcriptional repressor p66-alpha isoform C. (621 aa)
	RBBP4-2	WD_REPEATS_REGION domain-containing protein. (425 aa)
	SNAI2	Zinc finger protein SNAI2. (268 aa)
	RBBP4	Histone-binding protein RBBP4. (424 aa)
	LAMTOR1	Ragulator complex protein LAMTOR1. (161 aa)
	PHC2	Polyhomeotic-like protein 2 isoform A. (324 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIRE	EZH1	A0A151NUV3	A0A151PBG5	Autoimmune regulator isoform B.	Uncharacterized protein.	0.407
AIRE	EZH2	A0A151NUV3	A0A151P243	Autoimmune regulator isoform B.	Histone-lysine N-methyltransferase EZH2 isoform A.	0.407
AIRE	GATAD2A	A0A151NUV3	A0A151MM98	Autoimmune regulator isoform B.	Transcriptional repressor p66-alpha isoform C.	0.765
AIRE	GATAD2B	A0A151NUV3	A0A151PIY7	Autoimmune regulator isoform B.	Transcriptional repressor p66-beta isoform B.	0.765
AIRE	MTA1	A0A151NUV3	A0A151P3Q2	Autoimmune regulator isoform B.	Metastasis-associated protein MTA1.	0.693
AIRE	MTA1-2	A0A151NUV3	A0A151NSM9	Autoimmune regulator isoform B.	Uncharacterized protein.	0.693
AIRE	MTA2	A0A151NUV3	A0A151M3Y3	Autoimmune regulator isoform B.	Uncharacterized protein.	0.693
AIRE	RBBP4	A0A151NUV3	A0A151N0F6	Autoimmune regulator isoform B.	Histone-binding protein RBBP4.	0.780
AIRE	RBBP4-2	A0A151NUV3	A0A151MMQ9	Autoimmune regulator isoform B.	WD_REPEATS_REGION domain-containing protein.	0.780
AIRE	SALL4	A0A151NUV3	A0A151P0A9	Autoimmune regulator isoform B.	Sal-like protein 4.	0.497
CBX2	CBX4	A0A151NRL3	A0A151NR94	Chromobox protein-like protein 2.	E3 SUMO-protein ligase CBX4.	0.860
CBX2	CBX6	A0A151NRL3	A0A151NHM3	Chromobox protein-like protein 2.	Chromobox protein-like protein 6 isoform A.	0.621
CBX2	CBX7-1	A0A151NRL3	A0A151NHL9	Chromobox protein-like protein 2.	Chromobox protein-like protein 7 isoform B.	0.703
CBX2	CBX8	A0A151NRL3	A0A151NR84	Chromobox protein-like protein 2.	Chromobox protein-like protein 8.	0.847
CBX2	EED	A0A151NRL3	A0A151NM02	Chromobox protein-like protein 2.	Polycomb protein EED.	0.896
CBX2	EZH1	A0A151NRL3	A0A151PBG5	Chromobox protein-like protein 2.	Uncharacterized protein.	0.659
CBX2	EZH2	A0A151NRL3	A0A151P243	Chromobox protein-like protein 2.	Histone-lysine N-methyltransferase EZH2 isoform A.	0.659
CBX2	MECOM	A0A151NRL3	A0A151NBA4	Chromobox protein-like protein 2.	MDS1 and EVI1 complex locus protein EVI1 isoform A.	0.445
CBX2	PHC1	A0A151NRL3	A0A151P6I7	Chromobox protein-like protein 2.	Polyhomeotic-like protein 1 isoform A.	0.448
CBX2	PHC2	A0A151NRL3	A0A151PJC5	Chromobox protein-like protein 2.	Polyhomeotic-like protein 2 isoform A.	0.448