12 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IRAK2	Interleukin-1 receptor-associated kinase-like 2. (732 aa)
	Y1Q_0011504	Uncharacterized protein. (742 aa)
	TRAF6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	TLR4	Toll-like receptor 4; Belongs to the Toll-like receptor family. (843 aa)
	LY96	Lymphocyte antigen 96. (131 aa)
	MAP3K7	Mitogen-activated protein kinase kinase kinase 7 isoform A. (610 aa)
	TAB1	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1. (502 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	CD14	Monocyte differentiation antigen CD14. (461 aa)
	SCARB1	Scavenger receptor class B member 1 isoform A. (959 aa)
	TAB3	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3. (368 aa)
	SARM1	Sterile alpha and TIR motif-containing protein 1. (716 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD14	IRAK2	A0A151NQZ5	A0A151MKA5	Monocyte differentiation antigen CD14.	Interleukin-1 receptor-associated kinase-like 2.	0.402
CD14	LY96	A0A151NQZ5	A0A151MN59	Monocyte differentiation antigen CD14.	Lymphocyte antigen 96.	0.890
CD14	TAB3	A0A151NQZ5	A0A151NUV1	Monocyte differentiation antigen CD14.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3.	0.409
CD14	TLR4	A0A151NQZ5	A0A151MF98	Monocyte differentiation antigen CD14.	Toll-like receptor 4; Belongs to the Toll-like receptor family.	0.851
CD14	TRAF6	A0A151NQZ5	A0A151MBD1	Monocyte differentiation antigen CD14.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.424
IRAK2	CD14	A0A151MKA5	A0A151NQZ5	Interleukin-1 receptor-associated kinase-like 2.	Monocyte differentiation antigen CD14.	0.402
IRAK2	LY96	A0A151MKA5	A0A151MN59	Interleukin-1 receptor-associated kinase-like 2.	Lymphocyte antigen 96.	0.650
IRAK2	MAP3K7	A0A151MKA5	A0A151MTU0	Interleukin-1 receptor-associated kinase-like 2.	Mitogen-activated protein kinase kinase kinase 7 isoform A.	0.740
IRAK2	RPS27A	A0A151MKA5	A0A151MGG2	Interleukin-1 receptor-associated kinase-like 2.	Ubiquitin-40S ribosomal protein S27a.	0.611
IRAK2	SCARB1	A0A151MKA5	A0A151NSC4	Interleukin-1 receptor-associated kinase-like 2.	Scavenger receptor class B member 1 isoform A.	0.614
IRAK2	TAB1	A0A151MKA5	A0A151NIG6	Interleukin-1 receptor-associated kinase-like 2.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1.	0.775
IRAK2	TAB3	A0A151MKA5	A0A151NUV1	Interleukin-1 receptor-associated kinase-like 2.	TGF-beta-activated kinase 1 and MAP3K7-binding protein 3.	0.843
IRAK2	TLR4	A0A151MKA5	A0A151MF98	Interleukin-1 receptor-associated kinase-like 2.	Toll-like receptor 4; Belongs to the Toll-like receptor family.	0.731
IRAK2	TRAF6	A0A151MKA5	A0A151MBD1	Interleukin-1 receptor-associated kinase-like 2.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.982
IRAK2	Y1Q_0011504	A0A151MKA5	A0A151M001	Interleukin-1 receptor-associated kinase-like 2.	Uncharacterized protein.	0.580
LY96	CD14	A0A151MN59	A0A151NQZ5	Lymphocyte antigen 96.	Monocyte differentiation antigen CD14.	0.890
LY96	IRAK2	A0A151MN59	A0A151MKA5	Lymphocyte antigen 96.	Interleukin-1 receptor-associated kinase-like 2.	0.650
LY96	MAP3K7	A0A151MN59	A0A151MTU0	Lymphocyte antigen 96.	Mitogen-activated protein kinase kinase kinase 7 isoform A.	0.592
LY96	RPS27A	A0A151MN59	A0A151MGG2	Lymphocyte antigen 96.	Ubiquitin-40S ribosomal protein S27a.	0.533
LY96	SARM1	A0A151MN59	A0A151NVG6	Lymphocyte antigen 96.	Sterile alpha and TIR motif-containing protein 1.	0.485