22 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ABHD17B	Hydrolase_4 domain-containing protein. (182 aa)
	ARL2-2	Uncharacterized protein. (75 aa)
	NRAS	GTPase NRas. (189 aa)
	ZDHHC9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (360 aa)
	Y1Q_0006325	Uncharacterized protein. (188 aa)
	SCARB1	Scavenger receptor class B member 1 isoform A. (959 aa)
	KRAS-1	GTPase KRas. (215 aa)
	ZDHHC18-1	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (382 aa)
	KRAS-2	GTPase KRas. (219 aa)
	RCE1	CAAX prenyl protease 2. (286 aa)
	ABHD17A	Alpha/beta hydrolase domain-containing protein 17A. (304 aa)
	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B. (380 aa)
	Y1Q_0018846	Uncharacterized protein. (422 aa)
	ICMT	Protein-S-isoprenylcysteine O-methyltransferase. (288 aa)
	GOLGA7	Golgin subfamily A member 7. (137 aa)
	FNTB	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (425 aa)
	CHURC1	Protein Churchill. (100 aa)
	GOLGA7B	Golgin subfamily A member 7B. (170 aa)
	BCL2L1	Bcl-2-like protein 1. (281 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ABHD17C	Hydrolase_4 domain-containing protein. (207 aa)
	ZDHHC14	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (620 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCL2L1	KRAS-1	A0A151MIE3	A0A151NK14	Bcl-2-like protein 1.	GTPase KRas.	0.613
BCL2L1	KRAS-2	A0A151MIE3	A0A151NIW9	Bcl-2-like protein 1.	GTPase KRas.	0.613
BCL2L1	NRAS	A0A151MIE3	A0A151PHE9	Bcl-2-like protein 1.	GTPase NRas.	0.613
BCL2L1	Y1Q_0006325	A0A151MIE3	A0A151NXS6	Bcl-2-like protein 1.	Uncharacterized protein.	0.613
CHURC1	FNTA	A0A151MN46	A0A151NE77	Protein Churchill.	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	0.957
CHURC1	ICMT	A0A151MN46	A0A151N3M9	Protein Churchill.	Protein-S-isoprenylcysteine O-methyltransferase.	0.538
CHURC1	KRAS-1	A0A151MN46	A0A151NK14	Protein Churchill.	GTPase KRas.	0.514
CHURC1	KRAS-2	A0A151MN46	A0A151NIW9	Protein Churchill.	GTPase KRas.	0.514
CHURC1	NRAS	A0A151MN46	A0A151PHE9	Protein Churchill.	GTPase NRas.	0.514
CHURC1	RCE1	A0A151MN46	A0A151NHA9	Protein Churchill.	CAAX prenyl protease 2.	0.809
CHURC1	Y1Q_0006325	A0A151MN46	A0A151NXS6	Protein Churchill.	Uncharacterized protein.	0.514
FNTA	CHURC1	A0A151NE77	A0A151MN46	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	Protein Churchill.	0.957
FNTA	FNTB	A0A151NE77	A0A151MNA1	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.957
FNTA	ICMT	A0A151NE77	A0A151N3M9	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	Protein-S-isoprenylcysteine O-methyltransferase.	0.701
FNTA	KRAS-1	A0A151NE77	A0A151NK14	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	GTPase KRas.	0.469
FNTA	KRAS-2	A0A151NE77	A0A151NIW9	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	GTPase KRas.	0.469
FNTA	NRAS	A0A151NE77	A0A151PHE9	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	GTPase NRas.	0.469
FNTA	RCE1	A0A151NE77	A0A151NHA9	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	CAAX prenyl protease 2.	0.873
FNTA	Y1Q_0006325	A0A151NE77	A0A151NXS6	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	Uncharacterized protein.	0.469
FNTB	FNTA	A0A151MNA1	A0A151NE77	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform B.	0.957