STRINGSTRING
RPS16 RPS16 RPS15 RPS15 RPS23 RPS23 RPS27 RPS27 RPL29 RPL29 RPL3-2 RPL3-2 RPL13A RPL13A RPL36A RPL36A RPL8 RPL8 ETF1 ETF1 RPS26 RPS26 RPL6 RPL6 RPL38 RPL38 RPL31 RPL31 Y1Q_0006266 Y1Q_0006266 RPLP2 RPLP2 RPS10 RPS10 RPS21 RPS21 PABPC1L PABPC1L UPF1 UPF1 RPS6 RPS6 RPSA RPSA RPL19 RPL19 RPL23 RPL23 RPS9 RPS9 RPS11 RPS11 RPL27A RPL27A RPL37A RPL37A RPS19 RPS19 RPS3 RPS3 AKNAD1-1 AKNAD1-1 RPL5 RPL5 RPL26L1 RPL26L1 RPL4 RPL4 RPS27L RPS27L Y1Q_0000679 Y1Q_0000679 RPS13 RPS13 RPL24 RPL24 RPL12 RPL12 RPL7A RPL7A RPL18 RPL18 RPL28 RPL28 RPL22L1 RPL22L1 Y1Q_0004251 Y1Q_0004251 ZGRF1 ZGRF1 RPL34 RPL34 RPS17 RPS17 RPS5 RPS5 RPL11-1 RPL11-1 PABPC1 PABPC1 RPL7 RPL7 RPS20 RPS20 RPL15 RPL15 RPL14 RPL14 RPL21 RPL21 RPS24-1 RPS24-1 RPL23A RPL23A RPS25 RPS25 RPL17 RPL17 RPL37 RPL37 RPL30 RPL30 RPL35 RPL35 GSPT1 GSPT1 ARL6IP1 ARL6IP1 Y1Q_0008192 Y1Q_0008192 RPL3 RPL3 RPS2 RPS2 RSAD1 RSAD1 Y1Q_0009070 Y1Q_0009070 RPL22 RPL22 RPLP0 RPLP0 NCBP2 NCBP2 RPS18 RPS18 RPS7 RPS7 Y1Q_0014921 Y1Q_0014921 RNPEPL1 RNPEPL1 RSRC1 RSRC1 RPL36 RPL36 RPL10L RPL10L NCBP1 NCBP1 RPS4X RPS4X RPLP1 RPLP1 RPL9 RPL9 RPS3A RPS3A RPL27 RPL27 RPS8 RPS8 RPL7L1 RPL7L1 RPL18A RPL18A
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPS1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (167 aa)
RPS1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (161 aa)
RPS2340S ribosomal protein S23 isoform A; Belongs to the universal ribosomal protein uS12 family. (143 aa)
RPS2740S ribosomal protein S27. (84 aa)
RPL2960S ribosomal protein L29. (260 aa)
RPL3-2Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (403 aa)
RPL13A60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (203 aa)
RPL36A60S ribosomal protein L36a isoform B; Belongs to the eukaryotic ribosomal protein eL42 family. (150 aa)
RPL860S ribosomal protein L8. (267 aa)
ETF1Eukaryotic peptide chain release factor subunit 1. (437 aa)
RPS2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
RPL660S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (257 aa)
RPL3860S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
RPL3160S ribosomal protein L31. (180 aa)
Y1Q_0006266Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (184 aa)
RPLP260S acidic ribosomal protein P2 isoform A; Belongs to the eukaryotic ribosomal protein P1/P2 family. (141 aa)
RPS1040S ribosomal protein S10. (195 aa)
RPS2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
PABPC1LPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (580 aa)
UPF1Regulator of nonsense transcripts 1. (1102 aa)
RPS640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
RPSA40S ribosomal protein SA. (149 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
RPL2360S ribosomal protein L23 isoform A; Belongs to the universal ribosomal protein uL14 family. (140 aa)
RPS940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
RPS1140S ribosomal protein S11 isoform A; Belongs to the universal ribosomal protein uS17 family. (158 aa)
RPL27A60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (148 aa)
RPL37A60S ribosomal protein L37a. (92 aa)
RPS1940S ribosomal protein S19. (515 aa)
RPS340S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (278 aa)
AKNAD1-1Protein AKNAD1 isoform A. (1047 aa)
RPL560S ribosomal protein L5. (317 aa)
RPL26L160S ribosomal protein L26-like 1. (116 aa)
RPL460S ribosomal protein L4. (363 aa)
RPS27L40S ribosomal protein S27. (84 aa)
Y1Q_0000679Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (111 aa)
RPS1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (147 aa)
RPL2460S ribosomal protein L24. (157 aa)
RPL1260S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (147 aa)
RPL7A60S ribosomal protein L7a. (266 aa)
RPL1860S ribosomal protein L18. (188 aa)
RPL2860S ribosomal protein L28. (153 aa)
RPL22L160S ribosomal protein L22-like 1. (121 aa)
Y1Q_0004251RL10P_insert domain-containing protein. (178 aa)
ZGRF1Protein ZGRF1 isoform A. (1793 aa)
RPL3460S ribosomal protein L34. (117 aa)
RPS1740S ribosomal protein S17. (1124 aa)
RPS540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (514 aa)
RPL11-160S ribosomal protein L11 isoform A; Belongs to the universal ribosomal protein uL5 family. (179 aa)
PABPC1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (617 aa)
RPL760S ribosomal protein L7. (223 aa)
RPS2040S ribosomal protein S20. (119 aa)
RPL15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (186 aa)
RPL1460S ribosomal protein L14. (139 aa)
RPL2160S ribosomal protein L21. (147 aa)
RPS24-140S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
RPL23A60S ribosomal protein L23a. (144 aa)
RPS2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (126 aa)
RPL1760S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (264 aa)
RPL37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
RPL3060S ribosomal protein L30. (175 aa)
RPL3560S ribosomal protein L35. (123 aa)
GSPT1Eukaryotic peptide chain release factor GTP-binding subunit ERF3A. (591 aa)
ARL6IP1ADP-ribosylation factor-like protein 6-interacting protein 1; Belongs to the universal ribosomal protein uS8 family. (380 aa)
Y1Q_0008192Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (126 aa)
RPL360S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (407 aa)
RPS240S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (221 aa)
RSAD1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (481 aa)
Y1Q_0009070Olfactory receptor. (317 aa)
RPL2260S ribosomal protein L22. (125 aa)
RPLP060S acidic ribosomal protein P0. (367 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
RPS1840S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
RPS740S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
Y1Q_0014921Patatin-like phospholipase domain-containing protein 1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (391 aa)
RNPEPL1Arginyl aminopeptidase-like 1. (559 aa)
RSRC1Serine/Arginine-related protein 53. (247 aa)
RPL3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (186 aa)
RPL10L60S ribosomal protein L10. (77 aa)
NCBP1Nuclear cap-binding protein subunit 1. (794 aa)
RPS4X40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (280 aa)
RPLP160S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
RPL960S ribosomal protein L9. (143 aa)
RPS3A40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (264 aa)
RPL2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (170 aa)
RPS840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
RPL7L160S ribosomal protein L7-like 1. (247 aa)
RPL18A60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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