(6 nodes) PRELI-like family network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRELID2	PRELI domain-containing protein 2 isoform A. (181 aa)
	SEC14L1	SEC14-like protein 1. (748 aa)
	SEC14L5	Uncharacterized protein. (755 aa)
	PRELID3A	Slowmo-like protein 1. (193 aa)
	PRELID3B	Slowmo-like protein 2. (194 aa)
	PRELID1	PRELI domain-containing protein 1, mitochondrial. (215 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRELID1	PRELID2	A0A151PFZ6	A0A151M6X2	PRELI domain-containing protein 1, mitochondrial.	PRELI domain-containing protein 2 isoform A.	0.539
PRELID1	PRELID3A	A0A151PFZ6	A0A151NEZ7	PRELI domain-containing protein 1, mitochondrial.	Slowmo-like protein 1.	0.816
PRELID1	PRELID3B	A0A151PFZ6	A0A151NYR9	PRELI domain-containing protein 1, mitochondrial.	Slowmo-like protein 2.	0.818
PRELID2	PRELID1	A0A151M6X2	A0A151PFZ6	PRELI domain-containing protein 2 isoform A.	PRELI domain-containing protein 1, mitochondrial.	0.539
PRELID3A	PRELID1	A0A151NEZ7	A0A151PFZ6	Slowmo-like protein 1.	PRELI domain-containing protein 1, mitochondrial.	0.816
PRELID3B	PRELID1	A0A151NYR9	A0A151PFZ6	Slowmo-like protein 2.	PRELI domain-containing protein 1, mitochondrial.	0.818