(10 nodes) Trichohyalin-plectin-homology domain network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCDC173	Coiled-coil domain-containing protein 173. (439 aa)
	Y1Q_0018387	Uncharacterized protein. (738 aa)
	Y1Q_0004477	Cilia-and flagella-associated protein 45-like. (355 aa)
	Y1Q_0004480	Cilia-and flagella-associated protein 45-like. (122 aa)
	Y1Q_0004479	Uncharacterized protein. (278 aa)
	TCHP	Trichoplein keratin filament-binding protein. (389 aa)
	Y1Q_0004436	Uncharacterized protein. (228 aa)
	CFAP45	Cilia-and flagella-associated protein 45. (811 aa)
	CFAP53	Cilia-and flagella-associated protein 53. (513 aa)
	MNS1	Meiosis-specific nuclear structural protein 1. (423 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC173	CFAP45	A0A151M080	A0A151NRA1	Coiled-coil domain-containing protein 173.	Cilia-and flagella-associated protein 45.	0.537
CCDC173	CFAP53	A0A151M080	A0A151MWH8	Coiled-coil domain-containing protein 173.	Cilia-and flagella-associated protein 53.	0.554
CCDC173	MNS1	A0A151M080	A0A151M9Y1	Coiled-coil domain-containing protein 173.	Meiosis-specific nuclear structural protein 1.	0.747
CCDC173	Y1Q_0004477	A0A151M080	A0A151NYV4	Coiled-coil domain-containing protein 173.	Cilia-and flagella-associated protein 45-like.	0.537
CFAP45	CCDC173	A0A151NRA1	A0A151M080	Cilia-and flagella-associated protein 45.	Coiled-coil domain-containing protein 173.	0.537
CFAP45	CFAP53	A0A151NRA1	A0A151MWH8	Cilia-and flagella-associated protein 45.	Cilia-and flagella-associated protein 53.	0.537
CFAP45	MNS1	A0A151NRA1	A0A151M9Y1	Cilia-and flagella-associated protein 45.	Meiosis-specific nuclear structural protein 1.	0.526
CFAP53	CCDC173	A0A151MWH8	A0A151M080	Cilia-and flagella-associated protein 53.	Coiled-coil domain-containing protein 173.	0.554
CFAP53	CFAP45	A0A151MWH8	A0A151NRA1	Cilia-and flagella-associated protein 53.	Cilia-and flagella-associated protein 45.	0.537
CFAP53	MNS1	A0A151MWH8	A0A151M9Y1	Cilia-and flagella-associated protein 53.	Meiosis-specific nuclear structural protein 1.	0.603
CFAP53	Y1Q_0004477	A0A151MWH8	A0A151NYV4	Cilia-and flagella-associated protein 53.	Cilia-and flagella-associated protein 45-like.	0.537
MNS1	CCDC173	A0A151M9Y1	A0A151M080	Meiosis-specific nuclear structural protein 1.	Coiled-coil domain-containing protein 173.	0.747
MNS1	CFAP45	A0A151M9Y1	A0A151NRA1	Meiosis-specific nuclear structural protein 1.	Cilia-and flagella-associated protein 45.	0.526
MNS1	CFAP53	A0A151M9Y1	A0A151MWH8	Meiosis-specific nuclear structural protein 1.	Cilia-and flagella-associated protein 53.	0.603
MNS1	Y1Q_0004477	A0A151M9Y1	A0A151NYV4	Meiosis-specific nuclear structural protein 1.	Cilia-and flagella-associated protein 45-like.	0.526
Y1Q_0004477	CCDC173	A0A151NYV4	A0A151M080	Cilia-and flagella-associated protein 45-like.	Coiled-coil domain-containing protein 173.	0.537
Y1Q_0004477	CFAP53	A0A151NYV4	A0A151MWH8	Cilia-and flagella-associated protein 45-like.	Cilia-and flagella-associated protein 53.	0.537
Y1Q_0004477	MNS1	A0A151NYV4	A0A151M9Y1	Cilia-and flagella-associated protein 45-like.	Meiosis-specific nuclear structural protein 1.	0.526