(13 nodes) (2012) Ganglioside biochemistry. network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLB1	Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family. (569 aa)
	NPC1-2	SSD domain-containing protein. (1281 aa)
	Y1Q_0001974	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family. (501 aa)
	UGT8	2-hydroxyacylsphingosine 1-beta-galactosyltransferase; Belongs to the UDP-glycosyltransferase family. (541 aa)
	GLB1-2	Beta-galactosidase. (651 aa)
	SNCA	Alpha-synuclein; Belongs to the synuclein family. (119 aa)
	GBA2	Non-lysosomal glucosylceramidase. (597 aa)
	ABCB1	Uncharacterized protein. (1277 aa)
	NPC1	Niemann-Pick C1 protein. (1300 aa)
	SPTLC3-2	Aminotran_1_2 domain-containing protein. (550 aa)
	SPTLC1	Serine palmitoyltransferase 1. (470 aa)
	RFNG	Beta-1,3-N-acetylglucosaminyltransferase. (406 aa)
	SPTLC3	Serine palmitoyltransferase 3 isoform A. (571 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB1	GBA2	A0A151MQG6	A0A151MRU9	Uncharacterized protein.	Non-lysosomal glucosylceramidase.	0.644
GBA2	ABCB1	A0A151MRU9	A0A151MQG6	Non-lysosomal glucosylceramidase.	Uncharacterized protein.	0.644
GBA2	GLB1	A0A151MRU9	A0A151LY90	Non-lysosomal glucosylceramidase.	Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.	0.908
GBA2	GLB1-2	A0A151MRU9	A0A151P2K4	Non-lysosomal glucosylceramidase.	Beta-galactosidase.	0.908
GBA2	RFNG	A0A151MRU9	A0A151M7J3	Non-lysosomal glucosylceramidase.	Beta-1,3-N-acetylglucosaminyltransferase.	0.570
GBA2	SPTLC1	A0A151MRU9	A0A151M7Z0	Non-lysosomal glucosylceramidase.	Serine palmitoyltransferase 1.	0.765
GBA2	SPTLC3	A0A151MRU9	A0A151M5H9	Non-lysosomal glucosylceramidase.	Serine palmitoyltransferase 3 isoform A.	0.666
GBA2	SPTLC3-2	A0A151MRU9	A0A151MGT8	Non-lysosomal glucosylceramidase.	Aminotran_1_2 domain-containing protein.	0.666
GBA2	UGT8	A0A151MRU9	A0A151PEL2	Non-lysosomal glucosylceramidase.	2-hydroxyacylsphingosine 1-beta-galactosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.946
GBA2	Y1Q_0001974	A0A151MRU9	A0A151PGM0	Non-lysosomal glucosylceramidase.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.944
GLB1	GBA2	A0A151LY90	A0A151MRU9	Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.	Non-lysosomal glucosylceramidase.	0.908
GLB1	GLB1-2	A0A151LY90	A0A151P2K4	Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.	Beta-galactosidase.	0.902
GLB1-2	GBA2	A0A151P2K4	A0A151MRU9	Beta-galactosidase.	Non-lysosomal glucosylceramidase.	0.908
GLB1-2	GLB1	A0A151P2K4	A0A151LY90	Beta-galactosidase.	Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.	0.902
RFNG	GBA2	A0A151M7J3	A0A151MRU9	Beta-1,3-N-acetylglucosaminyltransferase.	Non-lysosomal glucosylceramidase.	0.570
RFNG	SPTLC3	A0A151M7J3	A0A151M5H9	Beta-1,3-N-acetylglucosaminyltransferase.	Serine palmitoyltransferase 3 isoform A.	0.414
RFNG	SPTLC3-2	A0A151M7J3	A0A151MGT8	Beta-1,3-N-acetylglucosaminyltransferase.	Aminotran_1_2 domain-containing protein.	0.414
RFNG	UGT8	A0A151M7J3	A0A151PEL2	Beta-1,3-N-acetylglucosaminyltransferase.	2-hydroxyacylsphingosine 1-beta-galactosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.459
RFNG	Y1Q_0001974	A0A151M7J3	A0A151PGM0	Beta-1,3-N-acetylglucosaminyltransferase.	UDP-glucuronosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.405
SPTLC1	GBA2	A0A151M7Z0	A0A151MRU9	Serine palmitoyltransferase 1.	Non-lysosomal glucosylceramidase.	0.765