34 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EED	Polycomb protein EED. (427 aa)
	SMARCAD1	annotation not available (1108 aa)
	CUL4B	Cullin-4B; Belongs to the cullin family. (614 aa)
	TDRD1	Tudor domain-containing protein 1. (1090 aa)
	PHF1	PHD finger protein 1 isoform B. (569 aa)
	ING1	Inhibitor of growth protein. (281 aa)
	DAPK3	Death-associated protein kinase 3; Belongs to the protein kinase superfamily. (456 aa)
	MSH6	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1340 aa)
	DDX50	Nucleolar RNA helicase 2. (692 aa)
	DDX50-2	Uncharacterized protein. (684 aa)
	EZH2	Histone-lysine N-methyltransferase EZH2 isoform A. (806 aa)
	KAT7	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (611 aa)
	TDRD9	Putative ATP-dependent RNA helicase TDRD9. (1375 aa)
	HDAC4	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (1005 aa)
	MOV10L1	Putative helicase Mov10l1 isoform A. (1203 aa)
	SCMH1	Polycomb protein SCMH1 isoform A. (709 aa)
	PCGF1	Polycomb group RING finger protein 1. (223 aa)
	PHC2	Polyhomeotic-like protein 2 isoform A. (324 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (527 aa)
	TFPT	TCF3 fusion partner. (251 aa)
	TDRKH	Tudor and KH domain-containing protein. (626 aa)
	PPP2CA	Serine/threonine-protein phosphatase; Belongs to the SKP1 family. (474 aa)
	CHD7	Chromodomain-helicase-DNA-binding protein 7 isoform A. (2554 aa)
	TDRD3	Tudor domain-containing protein 3 isoform A. (743 aa)
	RYBP	RING1 and YY1-binding protein. (228 aa)
	RBBP4-2	WD_REPEATS_REGION domain-containing protein. (425 aa)
	JARID2	Protein Jumonji. (1183 aa)
	PRKAA1-2	Non-specific serine/threonine protein kinase. (547 aa)
	RBBP4	Histone-binding protein RBBP4. (424 aa)
	SUZ12	Polycomb protein SUZ12. (667 aa)
	DAXX	Death domain-associated protein 6 isoform A. (758 aa)
	TSSK6	Testis-specific serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily. (277 aa)
	USP44	Ubiquitin carboxyl-terminal hydrolase. (545 aa)
	AEBP2-1	Zinc finger protein AEBP2 isoform B. (455 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEBP2-1	EED	A0A151NIS0	A0A151NM02	Zinc finger protein AEBP2 isoform B.	Polycomb protein EED.	0.981
AEBP2-1	EZH2	A0A151NIS0	A0A151P243	Zinc finger protein AEBP2 isoform B.	Histone-lysine N-methyltransferase EZH2 isoform A.	0.918
AEBP2-1	JARID2	A0A151NIS0	A0A151MP78	Zinc finger protein AEBP2 isoform B.	Protein Jumonji.	0.989
AEBP2-1	PHF1	A0A151NIS0	A0A151NVE5	Zinc finger protein AEBP2 isoform B.	PHD finger protein 1 isoform B.	0.789
AEBP2-1	RBBP4	A0A151NIS0	A0A151N0F6	Zinc finger protein AEBP2 isoform B.	Histone-binding protein RBBP4.	0.969
AEBP2-1	RBBP4-2	A0A151NIS0	A0A151MMQ9	Zinc finger protein AEBP2 isoform B.	WD_REPEATS_REGION domain-containing protein.	0.970
AEBP2-1	SUZ12	A0A151NIS0	A0A151N2L9	Zinc finger protein AEBP2 isoform B.	Polycomb protein SUZ12.	0.991
CUL4B	RBBP4	A0A151NN33	A0A151N0F6	Cullin-4B; Belongs to the cullin family.	Histone-binding protein RBBP4.	0.557
CUL4B	RBBP4-2	A0A151NN33	A0A151MMQ9	Cullin-4B; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.557
DAPK3	DAXX	A0A151NX73	A0A151N7R1	Death-associated protein kinase 3; Belongs to the protein kinase superfamily.	Death domain-associated protein 6 isoform A.	0.507
DAXX	DAPK3	A0A151N7R1	A0A151NX73	Death domain-associated protein 6 isoform A.	Death-associated protein kinase 3; Belongs to the protein kinase superfamily.	0.507
EED	AEBP2-1	A0A151NM02	A0A151NIS0	Polycomb protein EED.	Zinc finger protein AEBP2 isoform B.	0.981
EED	EZH2	A0A151NM02	A0A151P243	Polycomb protein EED.	Histone-lysine N-methyltransferase EZH2 isoform A.	0.957
EED	HDAC4	A0A151NM02	A0A151PCS7	Polycomb protein EED.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.415
EED	JARID2	A0A151NM02	A0A151MP78	Polycomb protein EED.	Protein Jumonji.	0.988
EED	PCGF1	A0A151NM02	A0A151PHG9	Polycomb protein EED.	Polycomb group RING finger protein 1.	0.604
EED	PHC2	A0A151NM02	A0A151PJC5	Polycomb protein EED.	Polyhomeotic-like protein 2 isoform A.	0.431
EED	PHF1	A0A151NM02	A0A151NVE5	Polycomb protein EED.	PHD finger protein 1 isoform B.	0.839
EED	RBBP4	A0A151NM02	A0A151N0F6	Polycomb protein EED.	Histone-binding protein RBBP4.	0.960
EED	RBBP4-2	A0A151NM02	A0A151MMQ9	Polycomb protein EED.	WD_REPEATS_REGION domain-containing protein.	0.960