25 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHD3	Chromodomain-helicase-DNA-binding protein 3. (1920 aa)
	ATF7IP	Activating transcription factor 7-interacting protein 1 isoform A. (1086 aa)
	RBM7-1	RNA-binding protein 7 isoform B. (295 aa)
	PNLDC1	Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform B. (534 aa)
	GATAD2B	Transcriptional repressor p66-beta isoform B. (634 aa)
	TRIM24	Transcription intermediary factor 1-alpha isoform A. (1074 aa)
	DNMT1	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1505 aa)
	AGO1	Uncharacterized protein; Belongs to the argonaute family. (857 aa)
	MOV10L1	Putative helicase Mov10l1 isoform A. (1203 aa)
	MPHOSPH8	M-phase phosphoprotein 8. (790 aa)
	MTA1	Metastasis-associated protein MTA1. (590 aa)
	DROSHA	Ribonuclease 3. (1130 aa)
	ZCCHC8-1	Zinc finger CCHC domain-containing protein 8 isoform B. (1021 aa)
	CTCF	Transcriptional repressor CTCF. (735 aa)
	SUMO3	Small ubiquitin-related modifier. (94 aa)
	MORC2	MORC family CW-type zinc finger protein 2 isoform A. (1031 aa)
	SLC39A14	Zinc transporter ZIP14. (1452 aa)
	SUMO1	Small ubiquitin-related modifier. (93 aa)
	RBBP4	Histone-binding protein RBBP4. (424 aa)
	HDAC2	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
	MBD2	Methyl-CpG-binding domain protein 2. (222 aa)
	HDAC1	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (464 aa)
	RBBP4-2	WD_REPEATS_REGION domain-containing protein. (425 aa)
	GATAD2A	Transcriptional repressor p66-alpha isoform C. (621 aa)
	XPO5	Exportin-5 isoform B. (1191 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO1	DROSHA	A0A151PG32	A0A151P225	Uncharacterized protein; Belongs to the argonaute family.	Ribonuclease 3.	0.812
AGO1	MPHOSPH8	A0A151PG32	A0A151P825	Uncharacterized protein; Belongs to the argonaute family.	M-phase phosphoprotein 8.	0.470
AGO1	XPO5	A0A151PG32	A0A151MHC8	Uncharacterized protein; Belongs to the argonaute family.	Exportin-5 isoform B.	0.402
ATF7IP	MPHOSPH8	A0A151LYY6	A0A151P825	Activating transcription factor 7-interacting protein 1 isoform A.	M-phase phosphoprotein 8.	0.424
ATF7IP	SUMO1	A0A151LYY6	A0A151N988	Activating transcription factor 7-interacting protein 1 isoform A.	Small ubiquitin-related modifier.	0.402
ATF7IP	SUMO3	A0A151LYY6	A0A151NGU2	Activating transcription factor 7-interacting protein 1 isoform A.	Small ubiquitin-related modifier.	0.648
CHD3	GATAD2A	A0A151MCQ8	A0A151MM98	Chromodomain-helicase-DNA-binding protein 3.	Transcriptional repressor p66-alpha isoform C.	0.779
CHD3	GATAD2B	A0A151MCQ8	A0A151PIY7	Chromodomain-helicase-DNA-binding protein 3.	Transcriptional repressor p66-beta isoform B.	0.774
CHD3	HDAC1	A0A151MCQ8	A0A151MN13	Chromodomain-helicase-DNA-binding protein 3.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.814
CHD3	HDAC2	A0A151MCQ8	A0A151M2Z3	Chromodomain-helicase-DNA-binding protein 3.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.638
CHD3	MBD2	A0A151MCQ8	A0A151MWN4	Chromodomain-helicase-DNA-binding protein 3.	Methyl-CpG-binding domain protein 2.	0.756
CHD3	MPHOSPH8	A0A151MCQ8	A0A151P825	Chromodomain-helicase-DNA-binding protein 3.	M-phase phosphoprotein 8.	0.423
CHD3	MTA1	A0A151MCQ8	A0A151P3Q2	Chromodomain-helicase-DNA-binding protein 3.	Metastasis-associated protein MTA1.	0.693
CHD3	RBBP4	A0A151MCQ8	A0A151N0F6	Chromodomain-helicase-DNA-binding protein 3.	Histone-binding protein RBBP4.	0.780
CHD3	RBBP4-2	A0A151MCQ8	A0A151MMQ9	Chromodomain-helicase-DNA-binding protein 3.	WD_REPEATS_REGION domain-containing protein.	0.780
CHD3	SUMO1	A0A151MCQ8	A0A151N988	Chromodomain-helicase-DNA-binding protein 3.	Small ubiquitin-related modifier.	0.500
CHD3	SUMO3	A0A151MCQ8	A0A151NGU2	Chromodomain-helicase-DNA-binding protein 3.	Small ubiquitin-related modifier.	0.515
CTCF	DNMT1	A0A151NJM4	A0A151PGK4	Transcriptional repressor CTCF.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.404
DNMT1	CTCF	A0A151PGK4	A0A151NJM4	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Transcriptional repressor CTCF.	0.404
DNMT1	HDAC1	A0A151PGK4	A0A151MN13	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.781