STRINGSTRING
Y1Q_0008691 Y1Q_0008691 KCNH8 KCNH8 KCNH4 KCNH4 PASD1 PASD1 SPATS2 SPATS2 NPAS1 NPAS1 KCNH1 KCNH1 NPAS2 NPAS2 EPAS1 EPAS1 PER1 PER1 SIM1 SIM1 HSCB HSCB NPAS3 NPAS3 NPAS4 NPAS4 AHRR AHRR AHR2 AHR2 PASD1-2 PASD1-2 HIF1A HIF1A HIF3A-1 HIF3A-1 KCNH8-2 KCNH8-2 AHR AHR NCOA2 NCOA2 SIM2 SIM2 ARNTL ARNTL ARNT2 ARNT2 Y1Q_0021893 Y1Q_0021893 ARNT ARNT KCNH5 KCNH5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Y1Q_0008691Uncharacterized protein. (686 aa)
KCNH8Potassium voltage-gated channel subfamily H member 8 isoform A. (1163 aa)
KCNH4Potassium voltage-gated channel subfamily H member 4 isoform B. (1239 aa)
PASD1Circadian clock protein PASD1. (732 aa)
SPATS2Spermatogenesis-associated serine-rich protein 2 isoform A. (687 aa)
NPAS1Neuronal PAS domain-containing protein 1. (847 aa)
KCNH1Potassium voltage-gated channel subfamily H member 1. (959 aa)
NPAS2Uncharacterized protein. (936 aa)
EPAS1Endothelial PAS domain-containing protein 1. (863 aa)
PER1Period circadian protein-like protein 3. (1366 aa)
SIM1Uncharacterized protein. (766 aa)
HSCBIron-sulfur cluster co-chaperone protein HscB, mitochondrial. (159 aa)
NPAS3Neuronal PAS domain-containing protein 3 isoform B. (925 aa)
NPAS4Neuronal PAS domain-containing protein 4. (483 aa)
AHRRAryl hydrocarbon receptor repressor isoform A. (577 aa)
AHR2Aryl hydrocarbon receptor 2. (1104 aa)
PASD1-2Uncharacterized protein. (822 aa)
HIF1AUncharacterized protein. (747 aa)
HIF3A-1Hypoxia-inducible factor 3-alpha isoform C. (374 aa)
KCNH8-2Uncharacterized protein. (816 aa)
AHRAryl hydrocarbon receptor. (522 aa)
NCOA2Nuclear receptor coactivator. (1457 aa)
SIM2Single-minded-like protein 2. (768 aa)
ARNTLAryl hydrocarbon receptor nuclear translocator-like protein 1 isoform B. (651 aa)
ARNT2Uncharacterized protein. (749 aa)
Y1Q_0021893PAS domain-containing protein. (1057 aa)
ARNTAryl hydrocarbon receptor nuclear translocator isoform A. (785 aa)
KCNH5Uncharacterized protein. (989 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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