(9 nodes) Middle domain of eukaryotic initiation factor 4G (eIF4G) network (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOM1	Nucleolar MIF4G domain-containing protein 1. (681 aa)
	UPF2	Regulator of nonsense transcripts 2 isoform A. (1312 aa)
	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3. (1080 aa)
	NCBP1	Nuclear cap-binding protein subunit 1. (794 aa)
	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2 isoform A. (925 aa)
	CWC22	Pre-mRNA-splicing factor CWC22-like protein. (726 aa)
	PAIP1	Polyadenylate-binding protein-interacting protein 1. (406 aa)
	CTIF	CBP80/20-dependent translation initiation factor isoform A. (756 aa)
	Y1Q_0023290	Uncharacterized protein. (1565 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTIF	NCBP1	A0A151MWK6	A0A151NE25	CBP80/20-dependent translation initiation factor isoform A.	Nuclear cap-binding protein subunit 1.	0.615
EIF4G2	EIF4G3	A0A151MBW9	A0A151NM23	Eukaryotic translation initiation factor 4 gamma 2 isoform A.	Eukaryotic translation initiation factor 4 gamma 3.	0.921
EIF4G2	NCBP1	A0A151MBW9	A0A151NE25	Eukaryotic translation initiation factor 4 gamma 2 isoform A.	Nuclear cap-binding protein subunit 1.	0.777
EIF4G3	EIF4G2	A0A151NM23	A0A151MBW9	Eukaryotic translation initiation factor 4 gamma 3.	Eukaryotic translation initiation factor 4 gamma 2 isoform A.	0.921
EIF4G3	NCBP1	A0A151NM23	A0A151NE25	Eukaryotic translation initiation factor 4 gamma 3.	Nuclear cap-binding protein subunit 1.	0.776
NCBP1	CTIF	A0A151NE25	A0A151MWK6	Nuclear cap-binding protein subunit 1.	CBP80/20-dependent translation initiation factor isoform A.	0.615
NCBP1	EIF4G2	A0A151NE25	A0A151MBW9	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4 gamma 2 isoform A.	0.777
NCBP1	EIF4G3	A0A151NE25	A0A151NM23	Nuclear cap-binding protein subunit 1.	Eukaryotic translation initiation factor 4 gamma 3.	0.776
NCBP1	PAIP1	A0A151NE25	A0A151MX30	Nuclear cap-binding protein subunit 1.	Polyadenylate-binding protein-interacting protein 1.	0.776
NCBP1	UPF2	A0A151NE25	A0A151NPK6	Nuclear cap-binding protein subunit 1.	Regulator of nonsense transcripts 2 isoform A.	0.795
NCBP1	Y1Q_0023290	A0A151NE25	A0A151MJC0	Nuclear cap-binding protein subunit 1.	Uncharacterized protein.	0.776
PAIP1	NCBP1	A0A151MX30	A0A151NE25	Polyadenylate-binding protein-interacting protein 1.	Nuclear cap-binding protein subunit 1.	0.776
UPF2	NCBP1	A0A151NPK6	A0A151NE25	Regulator of nonsense transcripts 2 isoform A.	Nuclear cap-binding protein subunit 1.	0.795
Y1Q_0023290	NCBP1	A0A151MJC0	A0A151NE25	Uncharacterized protein.	Nuclear cap-binding protein subunit 1.	0.776