(35 nodes) Mixed, incl. Embryonic skeletal system morphogenesis, and N-terminal of Homeobox Meis and PKNOX1 network (Crocodylus porosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCPRP00005004663	annotation not available (135 aa)
	TSHZ3	Teashirt zinc finger homeobox 3. (1088 aa)
	TSHZ1	Teashirt zinc finger homeobox 1. (1083 aa)
	PBX1	PBX homeobox 1. (430 aa)
	HOXC10	Homeobox C10. (411 aa)
	HOXC8	Homeobox C8. (242 aa)
	HOXB1	Homeobox B1. (316 aa)
	HOXB3	Homeobox B3. (399 aa)
	HOXB4	Homeobox B4. (244 aa)
	HOXB5	Homeobox B5. (264 aa)
	HOXB6	Homeobox B6. (223 aa)
	HOXB7	Homeobox B7. (217 aa)
	HOXB8	Homeobox B8. (242 aa)
	HOXB9	Homeobox B9. (247 aa)
	MKX	Mohawk homeobox. (347 aa)
	PBX3	PBX homeobox 3. (433 aa)
	TGIF1	TGFB induced factor homeobox 1. (264 aa)
	MEIS1	Meis homeobox 1. (524 aa)
	TGIF2	TGFB induced factor homeobox 2. (264 aa)
	PBX4	PBX homeobox 4. (439 aa)
	HOXD3	Homeobox D3. (333 aa)
	HOXD4	Homeobox D4. (237 aa)
	HOXD9	Homeobox D9. (291 aa)
	HOXD10	Homeobox D10. (339 aa)
	HOXA1	Homeobox A1. (334 aa)
	HOXA3	Homeobox protein Hox-A3. (411 aa)
	ENSCPRP00005023149	annotation not available (109 aa)
	HOXA5	Homeobox A5. (270 aa)
	HOXA6	Homeobox A6. (231 aa)
	HOXA7	Homeobox A7. (219 aa)
	HOXA9	Homeobox A9. (261 aa)
	HOXA10	Homeobox A10. (271 aa)
	ENSCPRP00005023167	annotation not available (92 aa)
	PKNOX1	PBX/knotted 1 homeobox 1. (449 aa)
	MEIS2	Meis homeobox 2. (442 aa)

Your Current Organism:

Crocodylus porosus

NCBI taxonomy Id: 8502
Other names: Australian saltwater crocodile, C. porosus, ZMB 278, estuarine crocodile

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCPRP00005004663	PBX1	ENSCPRP00005004663	ENSCPRP00005007242	annotation not available	PBX homeobox 1.	0.671
ENSCPRP00005004663	PBX3	ENSCPRP00005004663	ENSCPRP00005015535	annotation not available	PBX homeobox 3.	0.671
ENSCPRP00005004663	PBX4	ENSCPRP00005004663	ENSCPRP00005019126	annotation not available	PBX homeobox 4.	0.671
ENSCPRP00005004663	TSHZ1	ENSCPRP00005004663	ENSCPRP00005006724	annotation not available	Teashirt zinc finger homeobox 1.	0.566
ENSCPRP00005004663	TSHZ3	ENSCPRP00005004663	ENSCPRP00005005766	annotation not available	Teashirt zinc finger homeobox 3.	0.592
ENSCPRP00005023149	ENSCPRP00005023167	ENSCPRP00005023149	ENSCPRP00005023167	annotation not available	annotation not available	0.416
ENSCPRP00005023149	HOXA10	ENSCPRP00005023149	ENSCPRP00005023160	annotation not available	Homeobox A10.	0.416
ENSCPRP00005023149	HOXA3	ENSCPRP00005023149	ENSCPRP00005023147	annotation not available	Homeobox protein Hox-A3.	0.773
ENSCPRP00005023149	HOXA9	ENSCPRP00005023149	ENSCPRP00005023155	annotation not available	Homeobox A9.	0.431
ENSCPRP00005023149	HOXD9	ENSCPRP00005023149	ENSCPRP00005019821	annotation not available	Homeobox D9.	0.400
ENSCPRP00005023149	PBX1	ENSCPRP00005023149	ENSCPRP00005007242	annotation not available	PBX homeobox 1.	0.575
ENSCPRP00005023149	PBX3	ENSCPRP00005023149	ENSCPRP00005015535	annotation not available	PBX homeobox 3.	0.575
ENSCPRP00005023149	PBX4	ENSCPRP00005023149	ENSCPRP00005019126	annotation not available	PBX homeobox 4.	0.575
ENSCPRP00005023167	ENSCPRP00005023149	ENSCPRP00005023167	ENSCPRP00005023149	annotation not available	annotation not available	0.416
ENSCPRP00005023167	HOXA10	ENSCPRP00005023167	ENSCPRP00005023160	annotation not available	Homeobox A10.	0.861
ENSCPRP00005023167	HOXA3	ENSCPRP00005023167	ENSCPRP00005023147	annotation not available	Homeobox protein Hox-A3.	0.517
ENSCPRP00005023167	HOXA6	ENSCPRP00005023167	ENSCPRP00005023152	annotation not available	Homeobox A6.	0.426
ENSCPRP00005023167	HOXA7	ENSCPRP00005023167	ENSCPRP00005023153	annotation not available	Homeobox A7.	0.645
ENSCPRP00005023167	HOXA9	ENSCPRP00005023167	ENSCPRP00005023155	annotation not available	Homeobox A9.	0.798
ENSCPRP00005023167	HOXB5	ENSCPRP00005023167	ENSCPRP00005010121	annotation not available	Homeobox B5.	0.522