10 items (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N302_11410	Epidermal growth factor receptor substrate 15. (898 aa)
	N302_07703	Clathrin heavy chain 1. (1662 aa)
	N302_05311	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (168 aa)
	N302_10391	Synaptojanin-1. (1589 aa)
	N302_07531	SH3-containing GRB2-like 3-interacting protein 1. (799 aa)
	N302_07399	Putative vesicular acetylcholine transporter-A. (229 aa)
	N302_03663	Epidermal growth factor receptor substrate 15-like 1. (903 aa)
	N302_05714	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (152 aa)
	N302_01472	Clathrin heavy chain 1. (1658 aa)
	N302_01263	AP-2 complex subunit alpha-2. (916 aa)

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_01263	N302_01472	A0A091EK03	A0A091ENP7	AP-2 complex subunit alpha-2.	Clathrin heavy chain 1.	0.885
N302_01263	N302_03663	A0A091EK03	A0A091F3T2	AP-2 complex subunit alpha-2.	Epidermal growth factor receptor substrate 15-like 1.	0.817
N302_01263	N302_05311	A0A091EK03	A0A091EFW2	AP-2 complex subunit alpha-2.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.887
N302_01263	N302_05714	A0A091EK03	A0A091EPH1	AP-2 complex subunit alpha-2.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.873
N302_01263	N302_07399	A0A091EK03	A0A091FBT7	AP-2 complex subunit alpha-2.	Putative vesicular acetylcholine transporter-A.	0.600
N302_01263	N302_07531	A0A091EK03	A0A091E905	AP-2 complex subunit alpha-2.	SH3-containing GRB2-like 3-interacting protein 1.	0.835
N302_01263	N302_07703	A0A091EK03	A0A091EGT9	AP-2 complex subunit alpha-2.	Clathrin heavy chain 1.	0.885
N302_01263	N302_11410	A0A091EK03	A0A091F5G5	AP-2 complex subunit alpha-2.	Epidermal growth factor receptor substrate 15.	0.817
N302_01472	N302_01263	A0A091ENP7	A0A091EK03	Clathrin heavy chain 1.	AP-2 complex subunit alpha-2.	0.885
N302_01472	N302_03663	A0A091ENP7	A0A091F3T2	Clathrin heavy chain 1.	Epidermal growth factor receptor substrate 15-like 1.	0.835
N302_01472	N302_05311	A0A091ENP7	A0A091EFW2	Clathrin heavy chain 1.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.992
N302_01472	N302_05714	A0A091ENP7	A0A091EPH1	Clathrin heavy chain 1.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.983
N302_01472	N302_07531	A0A091ENP7	A0A091E905	Clathrin heavy chain 1.	SH3-containing GRB2-like 3-interacting protein 1.	0.691
N302_01472	N302_07703	A0A091ENP7	A0A091EGT9	Clathrin heavy chain 1.	Clathrin heavy chain 1.	0.951
N302_01472	N302_10391	A0A091ENP7	A0A091ECP2	Clathrin heavy chain 1.	Synaptojanin-1.	0.700
N302_01472	N302_11410	A0A091ENP7	A0A091F5G5	Clathrin heavy chain 1.	Epidermal growth factor receptor substrate 15.	0.835
N302_03663	N302_01263	A0A091F3T2	A0A091EK03	Epidermal growth factor receptor substrate 15-like 1.	AP-2 complex subunit alpha-2.	0.817
N302_03663	N302_01472	A0A091F3T2	A0A091ENP7	Epidermal growth factor receptor substrate 15-like 1.	Clathrin heavy chain 1.	0.835
N302_03663	N302_05311	A0A091F3T2	A0A091EFW2	Epidermal growth factor receptor substrate 15-like 1.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.809
N302_03663	N302_05714	A0A091F3T2	A0A091EPH1	Epidermal growth factor receptor substrate 15-like 1.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.809