39 items (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N302_06091	U6 snRNA-associated Sm-like LSm6. (80 aa)
	N302_02053	Smad nuclear-interacting protein 1. (223 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
	N302_11390	116 kDa U5 small nuclear ribonucleoprotein component. (983 aa)
	N302_05174	Zinc finger matrin-type protein 2. (198 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	N302_06705	Pre-mRNA-splicing factor CWC22. (871 aa)
	N302_14042	Splicing factor 3A subunit 3. (453 aa)
	N302_06566	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	N302_12754	PHD finger-like domain-containing protein 5A. (93 aa)
	N302_11100	PHD finger-like domain-containing protein 5A. (110 aa)
	N302_08333	U4/U6 small nuclear ribonucleoprotein Prp4. (514 aa)
	N302_00248	Small nuclear ribonucleoprotein-associated protein B. (239 aa)
	N302_00330	Pre-mRNA-processing factor 6. (917 aa)
	N302_09816	Splicing factor 3B subunit 1. (1292 aa)
	N302_04928	Microfibrillar-associated protein 1. (414 aa)
	N302_02448	U6 snRNA-associated Sm-like LSm7. (101 aa)
	N302_05012	U2 small nuclear ribonucleoprotein A. (255 aa)
	N302_14786	BUD13. (406 aa)
	N302_10880	Splicing factor 3B subunit 4. (314 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
	N302_15502	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	N302_16040	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	N302_05039	WW domain-binding protein 4. (391 aa)
	N302_05685	WD40 repeat-containing protein SMU1. (505 aa)
	N302_12866	Small nuclear ribonucleoprotein F. (45 aa)
	N302_13282	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	N302_02398	Splicing factor 3A subunit 2. (205 aa)
	N302_14030	Smad nuclear-interacting protein 1. (280 aa)
	N302_12761	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	N302_03214	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (139 aa)
	N302_14768	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (91 aa)
	N302_11179	BUD13. (519 aa)
	N302_09863	Zinc finger matrin-type protein 2. (193 aa)
	N302_13667	U5 small nuclear ribonucleoprotein 200 kDa helicase. (185 aa)
	N302_11306	RING finger protein 113A. (290 aa)
	N302_07009	Splicing factor 3B subunit 3. (1225 aa)
	N302_16386	Pre-mRNA-processing-splicing factor 8. (2296 aa)

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A091EJF0	A0A091F4V1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	A0A091EJF0	A0A091ELG0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A091EJF0	A0A091F935	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	N302_00248	A0A091EJF0	A0A091E4U8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein B.	0.994
LSM3	N302_00330	A0A091EJF0	A0A091E522	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing factor 6.	0.958
LSM3	N302_02053	A0A091EJF0	A0A091F4S8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Smad nuclear-interacting protein 1.	0.818
LSM3	N302_02398	A0A091EJF0	A0A091EV70	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3A subunit 2.	0.931
LSM3	N302_02448	A0A091EJF0	A0A091E8W5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm7.	0.999
LSM3	N302_03214	A0A091EJF0	A0A091EYV0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.943
LSM3	N302_04928	A0A091EJF0	A0A091E8D3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Microfibrillar-associated protein 1.	0.759
LSM3	N302_05012	A0A091EJF0	A0A091EA46	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein A.	0.955
LSM3	N302_05039	A0A091EJF0	A0A091EQU7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WW domain-binding protein 4.	0.752
LSM3	N302_05174	A0A091EJF0	A0A091F6D2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zinc finger matrin-type protein 2.	0.918
LSM3	N302_05685	A0A091EJF0	A0A091ETY9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD40 repeat-containing protein SMU1.	0.695
LSM3	N302_06091	A0A091EJF0	A0A091F407	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm6.	0.999
LSM3	N302_06566	A0A091EJF0	A0A091FGG2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.897
LSM3	N302_07009	A0A091EJF0	A0A091F2P4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 3.	0.929
LSM3	N302_08333	A0A091EJF0	A0A091FMZ7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.989
LSM3	N302_09816	A0A091EJF0	A0A091E883	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3B subunit 1.	0.929
LSM3	N302_09863	A0A091EJF0	A0A091EZN7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zinc finger matrin-type protein 2.	0.918