13 items (Corvus brachyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N302_05013	Selenoprotein S. (118 aa)
	N302_14545	RBR-type E3 ubiquitin transferase. (462 aa)
	N302_07703	Clathrin heavy chain 1. (1662 aa)
	N302_01380	Squamous cell carcinoma antigen recognized by T-cells 3. (873 aa)
	N302_01472	Clathrin heavy chain 1. (1658 aa)
	N302_11128	Na(+)/H(+) exchange regulatory cofactor NHE-RF4. (363 aa)
	N302_07032	E3 ubiquitin-protein ligase AMFR. (557 aa)
	N302_07478	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (201 aa)
	N302_06176	E3 ubiquitin-protein ligase MARCH6. (904 aa)
	N302_04072	Protein YIPF7. (261 aa)
	N302_05398	Protein YIPF. (213 aa)
	N302_15151	Charged multivesicular body protein 3. (204 aa)
	N302_10859	E3 ubiquitin-protein ligase synoviolin B. (77 aa)

Your Current Organism:

Corvus brachyrhynchos

NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N302_01472	N302_07703	A0A091ENP7	A0A091EGT9	Clathrin heavy chain 1.	Clathrin heavy chain 1.	0.951
N302_04072	N302_07478	A0A091FUS7	A0A091FAM1	Protein YIPF7.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.814
N302_05013	N302_07032	A0A091E5V1	A0A091F3J3	Selenoprotein S.	E3 ubiquitin-protein ligase AMFR.	0.437
N302_05013	N302_07478	A0A091E5V1	A0A091FAM1	Selenoprotein S.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.893
N302_05013	N302_10859	A0A091E5V1	A0A091EBY5	Selenoprotein S.	E3 ubiquitin-protein ligase synoviolin B.	0.437
N302_05398	N302_07478	A0A091EEU2	A0A091FAM1	Protein YIPF.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.814
N302_06176	N302_07032	A0A091FKF4	A0A091F3J3	E3 ubiquitin-protein ligase MARCH6.	E3 ubiquitin-protein ligase AMFR.	0.794
N302_06176	N302_07478	A0A091FKF4	A0A091FAM1	E3 ubiquitin-protein ligase MARCH6.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.666
N302_06176	N302_10859	A0A091FKF4	A0A091EBY5	E3 ubiquitin-protein ligase MARCH6.	E3 ubiquitin-protein ligase synoviolin B.	0.794
N302_07032	N302_05013	A0A091F3J3	A0A091E5V1	E3 ubiquitin-protein ligase AMFR.	Selenoprotein S.	0.437
N302_07032	N302_06176	A0A091F3J3	A0A091FKF4	E3 ubiquitin-protein ligase AMFR.	E3 ubiquitin-protein ligase MARCH6.	0.794
N302_07032	N302_07478	A0A091F3J3	A0A091FAM1	E3 ubiquitin-protein ligase AMFR.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.976
N302_07478	N302_04072	A0A091FAM1	A0A091FUS7	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF7.	0.814
N302_07478	N302_05013	A0A091FAM1	A0A091E5V1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Selenoprotein S.	0.893
N302_07478	N302_05398	A0A091FAM1	A0A091EEU2	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein YIPF.	0.814
N302_07478	N302_06176	A0A091FAM1	A0A091FKF4	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase MARCH6.	0.666
N302_07478	N302_07032	A0A091FAM1	A0A091F3J3	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase AMFR.	0.976
N302_07478	N302_10859	A0A091FAM1	A0A091EBY5	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	E3 ubiquitin-protein ligase synoviolin B.	0.976
N302_07703	N302_01472	A0A091EGT9	A0A091ENP7	Clathrin heavy chain 1.	Clathrin heavy chain 1.	0.951
N302_10859	N302_05013	A0A091EBY5	A0A091E5V1	E3 ubiquitin-protein ligase synoviolin B.	Selenoprotein S.	0.437