STRINGSTRING
N302_09185 N302_09185 N302_01930 N302_01930 LSM8 LSM8 N302_02058 N302_02058 N302_10130 N302_10130 N302_12991 N302_12991 N302_02062 N302_02062 N302_05604 N302_05604 N302_07338 N302_07338 N302_06114 N302_06114 N302_05174 N302_05174 N302_15361 N302_15361 N302_01832 N302_01832 N302_16237 N302_16237 N302_03638 N302_03638 N302_11390 N302_11390 LSM4 LSM4 N302_16386 N302_16386 N302_01808 N302_01808 N302_03974 N302_03974 N302_06091 N302_06091 N302_00582 N302_00582 N302_07113 N302_07113 N302_00525 N302_00525 N302_03905 N302_03905 N302_14980 N302_14980 N302_13779 N302_13779 N302_07009 N302_07009 N302_03276 N302_03276 N302_04755 N302_04755 N302_06818 N302_06818 N302_08425 N302_08425 N302_16351 N302_16351 N302_02683 N302_02683 N302_14333 N302_14333 N302_01964 N302_01964 N302_06113 N302_06113 N302_05252 N302_05252 N302_09330 N302_09330 N302_09897 N302_09897 N302_15717 N302_15717 N302_01148 N302_01148 N302_14732 N302_14732 N302_05893 N302_05893 N302_10884 N302_10884 N302_00133 N302_00133 N302_03055 N302_03055 N302_13339 N302_13339 N302_00600 N302_00600 N302_15746 N302_15746 N302_02200 N302_02200 N302_15043 N302_15043 N302_05945 N302_05945 N302_05306 N302_05306 N302_15747 N302_15747 N302_14904 N302_14904 N302_01202 N302_01202 N302_07831 N302_07831 N302_15370 N302_15370 N302_00590 N302_00590 N302_00605 N302_00605 N302_15849 N302_15849 N302_00728 N302_00728 N302_10874 N302_10874 N302_10880 N302_10880 LSM3 LSM3 N302_02498 N302_02498 LSM5 LSM5 N302_15502 N302_15502 N302_15513 N302_15513 N302_03529 N302_03529 N302_12487 N302_12487 N302_07975 N302_07975 N302_08877 N302_08877 N302_09186 N302_09186 N302_12368 N302_12368 N302_12251 N302_12251 N302_14598 N302_14598 N302_05689 N302_05689 N302_12393 N302_12393 N302_07119 N302_07119 N302_09255 N302_09255 N302_00248 N302_00248 N302_00330 N302_00330 N302_00397 N302_00397 N302_08502 N302_08502 N302_05774 N302_05774 N302_00268 N302_00268 N302_00280 N302_00280 N302_08224 N302_08224 N302_09816 N302_09816 N302_13548 N302_13548 N302_02448 N302_02448 N302_08515 N302_08515 N302_08592 N302_08592 N302_08597 N302_08597 N302_05012 N302_05012 N302_14698 N302_14698 N302_05439 N302_05439 N302_05922 N302_05922 N302_04394 N302_04394 N302_16040 N302_16040 N302_13925 N302_13925 N302_13959 N302_13959 N302_09194 N302_09194 N302_12049 N302_12049 N302_15246 N302_15246 N302_04544 N302_04544 N302_12584 N302_12584 N302_00194 N302_00194 N302_12866 N302_12866 N302_10949 N302_10949 N302_06734 N302_06734 N302_14023 N302_14023 N302_13282 N302_13282 N302_13938 N302_13938 N302_02398 N302_02398 N302_07199 N302_07199 N302_06434 N302_06434 N302_04316 N302_04316 N302_13404 N302_13404 N302_14118 N302_14118 N302_12716 N302_12716 N302_12761 N302_12761 N302_09368 N302_09368 N302_12824 N302_12824 N302_08392 N302_08392 N302_01009 N302_01009 N302_09329 N302_09329 N302_08589 N302_08589 N302_11103 N302_11103 N302_10313 N302_10313 N302_03214 N302_03214 N302_02765 N302_02765 N302_14731 N302_14731 N302_14768 N302_14768 N302_09863 N302_09863 N302_13667 N302_13667 N302_08395 N302_08395 N302_01662 N302_01662 N302_01672 N302_01672 N302_01831 N302_01831 N302_05288 N302_05288 N302_10322 N302_10322 N302_01721 N302_01721 N302_07114 N302_07114 N302_08333 N302_08333 N302_11100 N302_11100 N302_12779 N302_12779 N302_12754 N302_12754 N302_09410 N302_09410 N302_06566 N302_06566 N302_14042 N302_14042 N302_02228 N302_02228 N302_04631 N302_04631 N302_16034 N302_16034 N302_08712 N302_08712 N302_11824 N302_11824 N302_07337 N302_07337 N302_09195 N302_09195
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N302_09185UPF0587 protein C1orf123. (143 aa)
N302_01930Pre-mRNA branch site protein p14. (125 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
N302_02058Germ cell-less protein-like 1. (429 aa)
N302_10130RNA-binding protein 5. (744 aa)
N302_12991U5 small nuclear ribonucleoprotein 40 kDa protein. (319 aa)
N302_02062U4/U6.U5 tri-snRNP-associated protein 2. (427 aa)
N302_05604Scaffold attachment factor B1. (790 aa)
N302_07338Nucleolar RNA helicase 2. (293 aa)
N302_06114Heterogeneous nuclear ribonucleoprotein D0. (279 aa)
N302_05174Zinc finger matrin-type protein 2. (198 aa)
N302_15361Heterogeneous nuclear ribonucleoproteins A2/B1. (339 aa)
N302_01832SNW domain-containing protein 1. (537 aa)
N302_16237Myelin expression factor 2. (551 aa)
N302_03638Heterogeneous nuclear ribonucleoprotein M. (523 aa)
N302_11390116 kDa U5 small nuclear ribonucleoprotein component. (983 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
N302_16386Pre-mRNA-processing-splicing factor 8. (2296 aa)
N302_01808G patch domain-containing protein 2-like. (479 aa)
N302_03974WW domain-containing adapter protein with coiled-coil. (599 aa)
N302_06091U6 snRNA-associated Sm-like LSm6. (80 aa)
N302_00582Putative ATP-dependent RNA helicase DDX59. (622 aa)
N302_07113Tudor domain-containing protein 12. (105 aa)
N302_00525Transcriptional adapter 1. (311 aa)
N302_03905ATP-dependent RNA helicase DQX1. (277 aa)
N302_14980Angiogenic factor with G patch and FHA domains 1. (644 aa)
N302_13779Transformer-2 protein beta. (275 aa)
N302_07009Splicing factor 3B subunit 3. (1225 aa)
N302_03276Uncharacterized protein. (123 aa)
N302_04755Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (780 aa)
N302_06818Lethal(3)malignant brain tumor-like 3. (376 aa)
N302_08425Splicing factor 45. (401 aa)
N302_16351Zinc finger protein 804A. (1187 aa)
N302_02683Ubiquitin-associated protein 2. (1133 aa)
N302_14333U2 small nuclear ribonucleoprotein B. (225 aa)
N302_01964Cell division cycle 5-like. (789 aa)
N302_06113Heterogeneous nuclear ribonucleoprotein D-like. (271 aa)
N302_05252Pre-mRNA-splicing factor RBM22. (402 aa)
N302_09330Small nuclear ribonucleoprotein G. (59 aa)
N302_09897Pre-mRNA-splicing factor SLU7. (582 aa)
N302_15717Putative ATP-dependent RNA helicase YTHDC2. (1327 aa)
N302_01148U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (457 aa)
N302_14732U1 small nuclear ribonucleoprotein C. (157 aa)
N302_05893Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (128 aa)
N302_10884RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
N302_00133WD repeat-containing protein 25. (327 aa)
N302_03055Zinc finger protein 804B. (1317 aa)
N302_13339Microtubule-associated protein RP/EB family member 2. (265 aa)
N302_00600RNA-binding protein 40. (449 aa)
N302_15746E3 ubiquitin-protein ligase Topors. (463 aa)
N302_02200Ubiquitin-associated protein 2-like. (57 aa)
N302_15043Transmembrane anterior posterior transformation protein 1. (501 aa)
N302_05945WD repeat-containing protein 53. (354 aa)
N302_05306THO complex subunit 3. (266 aa)
N302_15747E3 ubiquitin-protein ligase Topors. (844 aa)
N302_14904Heat shock 70 kDa protein 12A. (657 aa)
N302_01202Pre-mRNA-processing factor 19. (499 aa)
N302_07831RNA-binding Raly-like. (205 aa)
N302_15370Transformer-2 protein alpha. (256 aa)
N302_00590Pre-mRNA-splicing factor 38B. (368 aa)
N302_00605Zinc transporter 7. (322 aa)
N302_15849Zinc transporter 5. (765 aa)
N302_00728G patch domain-containing protein 2. (505 aa)
N302_10874U4/U6 small nuclear ribonucleoprotein Prp3. (684 aa)
N302_10880Splicing factor 3B subunit 4. (314 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
N302_02498Crooked neck-like 1. (676 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
N302_15502Small nuclear ribonucleoprotein Sm D3. (126 aa)
N302_15513ATP-dependent RNA helicase DDX51; Belongs to the DEAD box helicase family. (575 aa)
N302_03529Heat shock 70 kDa protein 13. (469 aa)
N302_12487Putative G-protein coupled receptor 149. (704 aa)
N302_07975Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
N302_08877Splicing factor U2AF 35 kDa subunit. (223 aa)
N302_09186Protein mago nashi 2. (147 aa)
N302_12368Heterogeneous nuclear ribonucleoprotein A/B. (263 aa)
N302_12251Nuclease-sensitive element-binding protein 1. (247 aa)
N302_14598Survival of motor neuron-related-splicing factor 30. (238 aa)
N302_05689Nuclear cap-binding protein subunit 1. (754 aa)
N302_12393Putative ATP-dependent RNA helicase DDX46. (1034 aa)
N302_07119U1 small nuclear ribonucleoprotein 70 kDa. (51 aa)
N302_09255THO complex subunit 4. (141 aa)
N302_00248Small nuclear ribonucleoprotein-associated protein B. (239 aa)
N302_00330Pre-mRNA-processing factor 6. (917 aa)
N302_00397RNA-binding protein 38. (159 aa)
N302_08502Zinc transporter 6. (402 aa)
N302_05774RNA-binding motif protein, X chromosome. (391 aa)
N302_00268Beta-catenin-like 1. (555 aa)
N302_00280Microtubule-associated protein RP/EB family member 1. (263 aa)
N302_08224ATP-dependent RNA helicase DHX8. (633 aa)
N302_09816Splicing factor 3B subunit 1. (1292 aa)
N302_13548R3H and coiled-coil domain-containing protein 1-like. (298 aa)
N302_02448U6 snRNA-associated Sm-like LSm7. (101 aa)
N302_08515Heterogeneous nuclear ribonucleoprotein U. (603 aa)
N302_08592Serine/arginine-rich splicing factor 7. (241 aa)
N302_08597Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (350 aa)
N302_05012U2 small nuclear ribonucleoprotein A. (255 aa)
N302_14698Pre-mRNA-splicing factor SPF27. (225 aa)
N302_05439Microtubule-associated protein RP/EB family member 3. (216 aa)
N302_05922Dynein assembly factor with WDR repeat domains 1. (402 aa)
N302_04394Coiled-coil domain-containing protein 12. (85 aa)
N302_16040Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
N302_13925Pre-mRNA-splicing factor SYF2. (198 aa)
N302_13959Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (222 aa)
N302_09194Low-density lipoprotein receptor class A domain-containing protein 1. (160 aa)
N302_12049Transcription elongation regulator 1-like. (469 aa)
N302_15246Phosducin-like 3. (238 aa)
N302_04544Ubiquitin-associated protein 2. (709 aa)
N302_12584Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (140 aa)
N302_00194Putative ATP-dependent RNA helicase DHX35. (696 aa)
N302_12866Small nuclear ribonucleoprotein F. (45 aa)
N302_10949Pre-mRNA-processing factor 40 A. (853 aa)
N302_06734Heterogeneous nuclear ribonucleoprotein A3 1. (249 aa)
N302_14023U7 snRNA-associated Sm-like LSm10. (122 aa)
N302_13282Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
N302_13938Serine/arginine-rich splicing factor 10. (248 aa)
N302_02398Splicing factor 3A subunit 2. (205 aa)
N302_07199Pre-mRNA-splicing factor ISY1. (217 aa)
N302_06434Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (634 aa)
N302_04316Pleiotropic regulator 1. (513 aa)
N302_13404Serine/arginine-rich splicing factor 3. (164 aa)
N302_14118Serine/arginine-rich splicing factor 6. (275 aa)
N302_12716Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (467 aa)
N302_12761Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
N302_09368Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
N302_12824WW domain-binding protein 11. (649 aa)
N302_08392Heat shock 70 kDa protein 14; Belongs to the heat shock protein 70 family. (503 aa)
N302_01009THO complex subunit 1. (640 aa)
N302_09329Nucleolysin TIA-1. (322 aa)
N302_08589Serine/arginine-rich splicing factor 7. (231 aa)
N302_11103Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (647 aa)
N302_10313Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (593 aa)
N302_03214Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (139 aa)
N302_02765Pre-mRNA-processing factor 17. (581 aa)
N302_14731UHRF1-binding protein 1. (1367 aa)
N302_14768Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (91 aa)
N302_09863Zinc finger matrin-type protein 2. (193 aa)
N302_13667U5 small nuclear ribonucleoprotein 200 kDa helicase. (185 aa)
N302_08395Pre-mRNA-splicing factor 18. (320 aa)
N302_01662Serine/arginine-rich splicing factor 5. (223 aa)
N302_01672Serine/arginine-rich splicing factor 4. (258 aa)
N302_01831RRM domain-containing protein. (75 aa)
N302_05288Transcription factor SOX-30. (491 aa)
N302_10322Complex III assembly factor LYRM7; Belongs to the complex I LYR family. (97 aa)
N302_01721Intron-binding protein aquarius. (1384 aa)
N302_07114Tudor domain-containing protein 12. (650 aa)
N302_08333U4/U6 small nuclear ribonucleoprotein Prp4. (514 aa)
N302_11100PHD finger-like domain-containing protein 5A. (110 aa)
N302_12779Polymerase delta-interacting protein 3. (415 aa)
N302_12754PHD finger-like domain-containing protein 5A. (93 aa)
N302_09410RNA-binding protein 41. (399 aa)
N302_06566Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
N302_14042Splicing factor 3A subunit 3. (453 aa)
N302_02228RNA-binding protein Raly. (270 aa)
N302_04631Zinc finger matrin-type protein 5. (170 aa)
N302_16034Retinitis pigmentosa 9 protein. (148 aa)
N302_08712Nucleolysin TIAR. (378 aa)
N302_11824Protein BUD31. (144 aa)
N302_07337Nucleolar RNA helicase 2. (288 aa)
N302_09195Transmembrane protein 59. (300 aa)
Your Current Organism:
Corvus brachyrhynchos
NCBI taxonomy Id: 85066
Other names: American crow, C. brachyrhynchos
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